Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   C6996_RS19425 Genome accession   NZ_CP027579
Coordinates   3880638..3881402 (-) Length   254 a.a.
NCBI ID   WP_103253587.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4282     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3875638..3886402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6996_RS19410 yhhJ 3878296..3879420 (+) 1125 WP_001314210.1 ABC transporter permease -
  C6996_RS19415 nikR 3879429..3879830 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  C6996_RS19420 nikE 3879835..3880641 (-) 807 WP_000173700.1 nickel import ATP-binding protein NikE -
  C6996_RS19425 amiE 3880638..3881402 (-) 765 WP_103253587.1 nickel import ATP-binding protein NikD Regulator
  C6996_RS19430 nikC 3881402..3882235 (-) 834 WP_106907719.1 nickel ABC transporter permease subunit NikC -
  C6996_RS19435 nikB 3882232..3883176 (-) 945 WP_000947081.1 nickel ABC transporter permease subunit NikB -
  C6996_RS19440 nikA 3883176..3884750 (-) 1575 WP_000953384.1 nickel ABC transporter substrate-binding protein -
  C6996_RS19445 acpT 3884861..3885448 (-) 588 WP_000285768.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26839.43 Da        Isoelectric Point: 6.6882

>NTDB_id=236104 C6996_RS19425 WP_103253587.1 3880638..3881402(-) (amiE) [Escherichia coli strain 2013C-4282]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCQALGKPADDATLIAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=236104 C6996_RS19425 WP_103253587.1 3880638..3881402(-) (amiE) [Escherichia coli strain 2013C-4282]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAACCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGTGGTAGCGGGAAGTCGCTGACCTGCGCTGCGACACTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGTATCAAA
ATTGCCACTATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACGCACGCGCGGGAAACTTGCCA
GGCACTGGGGAAACCCGCCGATGACGCCACGCTTATCGCCGCTATAGAAGCGGTAGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTATGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTTGATGTAGTAGCGCAAGCACGCATTCTGGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTGA
TGTCTCACGGTAAGATTGTTGAGCAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCTGCTCACCTCGCGCTTTATGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment