Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   TRNA_RS30595 Genome accession   NC_006270
Coordinates   1795501..1796280 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790501..1801280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS30575 (BL01280) trmFO 1791198..1792502 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  TRNA_RS30580 (BL01279) xerC 1792569..1793483 (+) 915 WP_011197974.1 tyrosine recombinase XerC -
  TRNA_RS30585 (BL01278) hslV 1793497..1794042 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  TRNA_RS30590 (BL01277) hslU 1794059..1795462 (+) 1404 WP_011197975.1 HslU--HslV peptidase ATPase subunit -
  TRNA_RS30595 (BL01276) codY 1795501..1796280 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  TRNA_RS30600 (BL01275) flgB 1796634..1797023 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  TRNA_RS30605 (BL01274) flgC 1797023..1797475 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  TRNA_RS30610 (BL01273) fliE 1797489..1797806 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  TRNA_RS30615 (BL01272) fliF 1797857..1799458 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  TRNA_RS30620 (BL01271) fliG 1799472..1800488 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  TRNA_RS30625 (BL01270) fliH 1800472..1801239 (+) 768 WP_011201651.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=23569 TRNA_RS30595 WP_003181756.1 1795501..1796280(+) (codY) [Bacillus licheniformis DSM 13 = ATCC 14580]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=23569 TRNA_RS30595 WP_003181756.1 1795501..1796280(+) (codY) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment