Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   XM38_RS04860 Genome accession   NZ_CP021983
Coordinates   1054367..1055467 (-) Length   366 a.a.
NCBI ID   WP_088429236.1    Uniprot ID   A0A1Z3HIG3
Organism   Halomicronema hongdechloris C2206     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049367..1060467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM38_RS04845 (XM38_010070) - 1050427..1052616 (-) 2190 WP_080806280.1 AMIN domain-containing protein -
  XM38_RS04850 (XM38_010080) - 1052688..1053602 (-) 915 WP_080806282.1 hypothetical protein -
  XM38_RS04855 (XM38_010090) - 1053599..1054363 (-) 765 WP_080806284.1 PilN domain-containing protein -
  XM38_RS04860 (XM38_010100) pilM 1054367..1055467 (-) 1101 WP_088429236.1 type IV pilus assembly protein PilM Machinery gene
  XM38_RS04865 (XM38_010110) - 1056548..1057832 (+) 1285 Protein_985 ABC transporter substrate-binding protein -
  XM38_RS04870 (XM38_010120) - 1057851..1059198 (-) 1348 Protein_986 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  XM38_RS04875 (XM38_010130) - 1059234..1059572 (-) 339 WP_080806285.1 P-II family nitrogen regulator -
  XM38_RS04880 (XM38_010140) - 1059717..1060352 (-) 636 WP_137455010.1 hypothetical protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39904.71 Da        Isoelectric Point: 4.3466

>NTDB_id=235605 XM38_RS04860 WP_088429236.1 1054367..1055467(-) (pilM) [Halomicronema hongdechloris C2206]
MNSLKALFSGKQPGVGVELTPERVNVARIRKQGSRLKLDNFSSIAISEGVFEEGQILDIPAMAEAIQAVIADSKLRIRRA
TSAIPGRAITRVIPVPSELNEQELREMVLNQEASLYLPFPREEADVDYQKLGFFVDEDGIEKVQVLLVAVRKEVTDAYMS
AFQQAGLGLNVLETSSFALIRTIREQLRQFTPQEAAAIVDIEFESTEISIVVDGIPHFSRTVPIGTYQIQSALSRAMNLP
PSRNTDLLQGMTVPTTPMDTMGTPQMGGTNPGTAAMLRILGELADELRRSIDFYLNQGEDMEVAQLLLAGPGGSIGQLDE
FFAQRLSLPASQIDPIAALSLDVDEEIPMAQRPGLATVIGLGIREV

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=235605 XM38_RS04860 WP_088429236.1 1054367..1055467(-) (pilM) [Halomicronema hongdechloris C2206]
GTGAATAGCTTAAAAGCTCTCTTCTCTGGAAAACAACCTGGCGTTGGCGTAGAGTTAACGCCAGAGCGAGTCAATGTGGC
CCGCATTCGCAAGCAGGGATCCAGATTGAAATTGGACAATTTCAGCTCCATTGCGATATCGGAAGGCGTCTTCGAAGAAG
GGCAAATTCTCGATATTCCTGCCATGGCAGAAGCGATTCAAGCAGTGATAGCAGACAGTAAGTTGCGGATTCGGCGAGCC
ACGAGTGCCATCCCTGGACGGGCTATTACCCGCGTGATTCCGGTGCCATCTGAATTGAATGAGCAGGAATTACGGGAGAT
GGTGCTTAACCAAGAAGCCAGCCTATATCTGCCATTCCCTCGGGAAGAAGCCGATGTGGACTATCAGAAGCTCGGGTTCT
TCGTGGATGAAGACGGCATCGAGAAGGTGCAAGTCCTACTGGTGGCCGTCCGCAAAGAGGTCACCGATGCCTATATGTCT
GCCTTTCAGCAGGCAGGGTTAGGGCTAAATGTATTGGAAACCAGTAGTTTTGCCCTGATTCGAACCATCCGGGAGCAGTT
ACGCCAATTCACCCCTCAAGAGGCAGCGGCCATCGTCGATATCGAGTTCGAGAGCACCGAAATTTCCATCGTGGTGGATG
GCATCCCCCACTTTTCCCGCACCGTGCCCATTGGTACTTATCAGATTCAGAGCGCCTTGAGTCGGGCCATGAATTTACCA
CCGTCCCGCAACACGGATTTGCTGCAGGGCATGACGGTGCCGACCACGCCTATGGATACGATGGGGACGCCCCAAATGGG
GGGAACCAATCCTGGGACAGCCGCGATGTTAAGGATTTTAGGAGAGCTGGCCGATGAGTTGCGCCGCTCCATTGACTTTT
ATCTGAATCAGGGAGAAGACATGGAGGTGGCTCAGTTGTTGCTGGCGGGGCCGGGGGGCTCGATTGGTCAGTTAGATGAG
TTCTTTGCCCAGCGCCTGAGTTTGCCAGCTAGTCAAATTGACCCGATTGCAGCCCTCTCATTAGATGTGGACGAGGAGAT
TCCCATGGCTCAGCGTCCGGGATTGGCAACGGTGATCGGACTGGGGATCAGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3HIG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

63.361

99.18

0.628

Multiple sequence alignment