Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CEA93_RS16015 Genome accession   NZ_CP021981
Coordinates   325735..327786 (+) Length   683 a.a.
NCBI ID   WP_013868489.1    Uniprot ID   A0AAW8GRZ9
Organism   Vibrio anguillarum strain 87-9-116     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 320735..332786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS16005 (CEA93_16005) - 321412..322554 (+) 1143 WP_040122745.1 exonuclease SbcCD subunit D -
  CEA93_RS16010 (CEA93_16010) - 322554..325595 (+) 3042 WP_013868488.1 SMC family ATPase -
  CEA93_RS16015 (CEA93_16015) cqsS 325735..327786 (+) 2052 WP_013868489.1 hybrid sensor histidine kinase/response regulator Regulator
  CEA93_RS16020 (CEA93_16020) cqsA 327873..329054 (-) 1182 WP_013868490.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEA93_RS16025 (CEA93_16025) - 329254..330228 (-) 975 WP_013868491.1 TDT family transporter -
  CEA93_RS16030 (CEA93_16030) clcA 330377..331774 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78399.73 Da        Isoelectric Point: 5.4015

>NTDB_id=235588 CEA93_RS16015 WP_013868489.1 325735..327786(+) (cqsS) [Vibrio anguillarum strain 87-9-116]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRAICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALACAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPNPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSSENCHQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSELG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETPDYLTKLEPKLHFTQAKVCYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFETEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=235588 CEA93_RS16015 WP_013868489.1 325735..327786(+) (cqsS) [Vibrio anguillarum strain 87-9-116]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGGCGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTACTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTTTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTCATGCTGATTCAAGCCGCCATTGCATTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTCTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTGTCGATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCAATCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTACAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAGTGAGAATTGCCACCAAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGCTGGACGATATTTTTAAAGACTTTTATACCTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGGGATATTATCTGCCGTTCTGAACTTGGA
GAGTGGACGGAGTTTACTTTAACGTTTCCCGAGTATGATTCGCAAGCCGTCGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCTGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGCCGGATTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGCGTTACGCGTTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGATCGGCGATTATTGATGAACTACTCTTTGAAACGGAAGAGCTTATTGCCGATAAAAATGTTATCCCATTAAAACAA
TATGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTACGTAGCTTCACCGCTCTGTTGCTAGAAAAGCA
AGGGTATGAAGTACTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAATTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCACACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment