Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C6950_RS15710 Genome accession   NZ_CP027550
Coordinates   2966551..2967018 (+) Length   155 a.a.
NCBI ID   WP_000340163.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-4136CT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2961551..2972018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6950_RS15660 rplP 2961661..2962071 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  C6950_RS15665 rpsC 2962084..2962785 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  C6950_RS15670 rplV 2962803..2963135 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  C6950_RS15675 rpsS 2963150..2963428 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  C6950_RS15680 rplB 2963445..2964266 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  C6950_RS15685 rplW 2964284..2964586 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  C6950_RS15690 rplD 2964583..2965188 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  C6950_RS15695 rplC 2965199..2965828 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  C6950_RS15700 rpsJ 2965861..2966172 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  C6950_RS15710 pilD 2966551..2967018 (+) 468 WP_000340163.1 A24 family peptidase Machinery gene
  C6950_RS15715 bfr 2967015..2967491 (-) 477 WP_000675515.1 bacterioferritin -
  C6950_RS15720 bfd 2967564..2967758 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  C6950_RS15730 tuf 2967941..2969125 (-) 1185 WP_000031783.1 elongation factor Tu -
  C6950_RS15735 fusA 2969196..2971310 (-) 2115 WP_000124700.1 elongation factor G -
  C6950_RS15740 rpsG 2971407..2971877 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17079.25 Da        Isoelectric Point: 8.1216

>NTDB_id=235583 C6950_RS15710 WP_000340163.1 2966551..2967018(+) (pilD) [Escherichia coli strain 2015C-4136CT1]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYSTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTLLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=235583 C6950_RS15710 WP_000340163.1 2966551..2967018(+) (pilD) [Escherichia coli strain 2015C-4136CT1]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTACCAGGTTTGTTATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACAGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTATTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCCTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CATTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTTGGCTGGGATAGTTTGCTGGCCGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment