Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEA93_RS01000 Genome accession   NZ_CP021980
Coordinates   198396..199097 (-) Length   233 a.a.
NCBI ID   WP_013855424.1    Uniprot ID   A0AAW4AGA2
Organism   Vibrio anguillarum strain 87-9-116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193396..204097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS00970 (CEA93_00970) gspL 193600..194811 (+) 1212 WP_013855430.1 type II secretion system protein GspL -
  CEA93_RS00975 (CEA93_00975) - 194822..195319 (+) 498 WP_013855429.1 type II secretion system protein M -
  CEA93_RS00980 (CEA93_00980) - 195316..196074 (+) 759 Protein_175 type II secretion system protein N -
  CEA93_RS00985 (CEA93_00985) cysQ 196157..196984 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CEA93_RS00990 (CEA93_00990) nudE 197009..197554 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CEA93_RS00995 (CEA93_00995) nfuA 197709..198296 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CEA93_RS01000 (CEA93_01000) comF 198396..199097 (-) 702 WP_013855424.1 amidophosphoribosyltransferase Machinery gene
  CEA93_RS01005 (CEA93_01005) bioH 199244..200008 (+) 765 WP_040122934.1 pimeloyl-ACP methyl ester esterase BioH -
  CEA93_RS01010 (CEA93_01010) - 200276..200746 (+) 471 WP_026027513.1 hypothetical protein -
  CEA93_RS01015 (CEA93_01015) - 200896..203226 (-) 2331 WP_013855420.1 Tex family protein -
  CEA93_RS01020 (CEA93_01020) greB 203570..204052 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.04 Da        Isoelectric Point: 9.4459

>NTDB_id=235547 CEA93_RS01000 WP_013855424.1 198396..199097(-) (comF) [Vibrio anguillarum strain 87-9-116]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=235547 CEA93_RS01000 WP_013855424.1 198396..199097(-) (comF) [Vibrio anguillarum strain 87-9-116]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGCGGGCAATGTTTAGCAAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAC
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACCAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGATTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACACCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCTTCC
CACGCACAAGCACATTGCACTTGTTGATGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment