Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CEG11_RS08405 Genome accession   NZ_CP021976
Coordinates   1627941..1628720 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain T20E-257     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622941..1633720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG11_RS08385 (CEG11_08385) trmFO 1623628..1624935 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CEG11_RS08390 (CEG11_08390) xerC 1625005..1625922 (+) 918 WP_003154270.1 tyrosine recombinase XerC -
  CEG11_RS08395 (CEG11_08395) hslV 1625938..1626483 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CEG11_RS08400 (CEG11_08400) hslU 1626500..1627903 (+) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  CEG11_RS08405 (CEG11_08405) codY 1627941..1628720 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CEG11_RS08410 (CEG11_08410) flgB 1629074..1629463 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CEG11_RS08415 (CEG11_08415) flgC 1629463..1629915 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CEG11_RS08420 (CEG11_08420) fliE 1629926..1630246 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  CEG11_RS08425 (CEG11_08425) fliF 1630289..1631899 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  CEG11_RS08430 (CEG11_08430) fliG 1631912..1632928 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CEG11_RS08435 (CEG11_08435) fliH 1632921..1633676 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=235494 CEG11_RS08405 WP_003154263.1 1627941..1628720(+) (codY) [Bacillus velezensis strain T20E-257]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=235494 CEG11_RS08405 WP_003154263.1 1627941..1628720(+) (codY) [Bacillus velezensis strain T20E-257]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCAGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment