Detailed information NTG0235415

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SE071780_RS01815
• Genome accession: NZ_CP021972
• Coordinates: 334170..335105 (+)
• Length: 311 a.a.
• NCBI ID: WP_012678999.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain ATCC 39506
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 329170..340105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE071780_RS01795 (SE071780_00373)	-	329330..330988 (+)	1659	WP_012678995.1	peptide ABC transporter substrate-binding protein	-
SE071780_RS01800 (SE071780_00374)	-	331157..332071 (+)	915	WP_012678996.1	ABC transporter permease	-
SE071780_RS01805 (SE071780_00375)	-	332081..333112 (+)	1032	WP_012678997.1	ABC transporter permease	-
SE071780_RS01810 (SE071780_00376)	oppD	333124..334170 (+)	1047	WP_012678998.1	ABC transporter ATP-binding protein	Regulator
SE071780_RS01815 (SE071780_00377)	amiF	334170..335105 (+)	936	WP_012678999.1	ATP-binding cassette domain-containing protein	Regulator
SE071780_RS01820 (SE071780_00378)	rnjA	335734..337416 (-)	1683	WP_012514941.1	ribonuclease J1	-
SE071780_RS01825 (SE071780_00379)	-	337418..337648 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
SE071780_RS01830 (SE071780_00380)	tsaB	337934..338632 (+)	699	WP_012679000.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SE071780_RS01835 (SE071780_00381)	rimI	338635..339060 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
SE071780_RS01840 (SE071780_00382)	tsaD	339050..340066 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34973.12 Da
• Isoelectric Point: 8.1293

>NTDB_id=235415 SE071780_RS01815 WP_012678999.1 334170..335105(+) (amiF) [Streptococcus equi subsp. equi strain ATCC 39506]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=235415 SE071780_RS01815 WP_012678999.1 334170..335105(+) (amiF) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTTTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAAGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGAACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGAATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.071	0.537
amiF	Streptococcus thermophilus LMG 18311	54.426	98.071	0.534
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531