Detailed information NTG0235341

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: CD200_RS09245
• Genome accession: NZ_CP021970
• Coordinates: 1790351..1791130 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain CBA7132
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1785351..1796130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD200_RS09225 (CD200_09250)	trmFO	1786048..1787352 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
CD200_RS09230 (CD200_09255)	xerC	1787419..1788333 (+)	915	WP_003181750.1	tyrosine recombinase XerC	-
CD200_RS09235 (CD200_09260)	hslV	1788347..1788892 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
CD200_RS09240 (CD200_09265)	hslU	1788900..1790312 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
CD200_RS09245 (CD200_09270)	codY	1790351..1791130 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
CD200_RS09250 (CD200_09275)	flgB	1791484..1791873 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
CD200_RS09255 (CD200_09280)	flgC	1791873..1792325 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
CD200_RS09260 (CD200_09285)	fliE	1792339..1792656 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
CD200_RS09265 (CD200_09290)	fliF	1792707..1794308 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
CD200_RS09270 (CD200_09295)	fliG	1794322..1795338 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
CD200_RS09275 (CD200_09300)	fliH	1795322..1796089 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=235341 CD200_RS09245 WP_003181756.1 1790351..1791130(+) (codY) [Bacillus licheniformis strain CBA7132]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=235341 CD200_RS09245 WP_003181756.1 1790351..1791130(+) (codY) [Bacillus licheniformis strain CBA7132]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467