Detailed information NTG0234958

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S101392_RS08705
• Genome accession: NZ_CP021921
• Coordinates: 1666609..1667388 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain SRCM101392
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1661609..1672388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101392_RS08685 (S101392_01722)	trmFO	1662302..1663609 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
S101392_RS08690 (S101392_01723)	xerC	1663677..1664591 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
S101392_RS08695 (S101392_01724)	clpQ	1664604..1665149 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
S101392_RS08700 (S101392_01725)	hslU	1665157..1666569 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
S101392_RS08705 (S101392_01726)	codY	1666609..1667388 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S101392_RS08710 (S101392_01727)	flgB	1667768..1668157 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
S101392_RS08715 (S101392_01728)	flgC	1668157..1668609 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
S101392_RS08720 (S101392_01729)	fliE	1668620..1668940 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
S101392_RS08725 (S101392_01730)	fliF	1668986..1670596 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
S101392_RS08730 (S101392_01731)	fliG	1670609..1671625 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
S101392_RS08735 (S101392_01732)	fliH	1671618..1672370 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=234958 S101392_RS08705 WP_003220850.1 1666609..1667388(+) (codY) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=234958 S101392_RS08705 WP_003220850.1 1666609..1667388(+) (codY) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467