Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   S101395_RS20200 Genome accession   NZ_CP021920
Coordinates   3828101..3828739 (-) Length   212 a.a.
NCBI ID   WP_006638893.1    Uniprot ID   M5PCK2
Organism   Bacillus sonorensis strain SRCM101395     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3823101..3833739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS20165 (S101395_04067) - 3824283..3824714 (+) 432 WP_006638886.1 Na(+)/H(+) antiporter subunit B -
  S101395_RS20170 (S101395_04068) - 3824714..3825055 (+) 342 WP_006638887.1 Na(+)/H(+) antiporter subunit C -
  S101395_RS20175 (S101395_04069) - 3825048..3826526 (+) 1479 WP_029418728.1 Na+/H+ antiporter subunit D -
  S101395_RS20180 (S101395_04070) - 3826532..3827008 (+) 477 WP_006638889.1 Na+/H+ antiporter subunit E -
  S101395_RS20185 (S101395_04071) - 3827008..3827292 (+) 285 WP_006638890.1 Na(+)/H(+) antiporter subunit F1 -
  S101395_RS20190 (S101395_04072) mnhG 3827276..3827650 (+) 375 WP_006638891.1 monovalent cation/H(+) antiporter subunit G -
  S101395_RS20195 (S101395_04073) - 3827690..3828082 (-) 393 WP_006638892.1 hotdog fold thioesterase -
  S101395_RS20200 (S101395_04074) comA 3828101..3828739 (-) 639 WP_006638893.1 response regulator transcription factor Regulator
  S101395_RS20205 - 3828821..3831132 (-) 2312 Protein_4005 ATP-binding protein -
  S101395_RS20210 (S101395_04077) comX 3831147..3831320 (-) 174 WP_006638895.1 competence pheromone ComX -
  S101395_RS20215 (S101395_04078) - 3831304..3832203 (-) 900 WP_006638896.1 polyprenyl synthetase family protein -
  S101395_RS20220 (S101395_04079) degQ 3832392..3832532 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  S101395_RS20230 (S101395_04080) - 3833039..3833365 (+) 327 WP_006638897.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24167.50 Da        Isoelectric Point: 4.5867

>NTDB_id=234916 S101395_RS20200 WP_006638893.1 3828101..3828739(-) (comA) [Bacillus sonorensis strain SRCM101395]
MRRLLVIDDHPAVMEGTKAILETNQDFLVDCLSPEASEQFLTKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYLKDLITQQKTKSNSQETQHDVLTERERLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFNKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=234916 S101395_RS20200 WP_006638893.1 3828101..3828739(-) (comA) [Bacillus sonorensis strain SRCM101395]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAGACGAACCAGGATTT
TCTTGTGGATTGCCTCAGCCCGGAAGCCAGCGAACAATTTCTGACTAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTGAATCTGGGTGAAATCAACGGAATGGACCTCTCTAAGAAAATCCTTGAGACCTGTTCATCATGCAAAATTATT
GTGTACACCGGATACGAAGTTGAGGATTATTTTGAGGAAGCGATCCGGTCCGGCATGCATGGTGCGATTAGCAAAACAGA
GTCGAAAGAAAAGATTATTGAATACATATATCAAGTATTGGATAACAAAATTGTCGTTGACTATGATTACTTGAAGGATC
TGATCACCCAGCAAAAAACGAAATCAAACAGCCAAGAGACCCAGCATGATGTATTGACCGAGAGAGAACGCCTGATTTTA
AAAGAAGTTGAAAAAGGCTATACGAATCAGGAGATTGCCGATGCGCTGCATCTGAGCAAGCGTTCGATCGAATACAGTCT
GACGTCCGTATTTAATAAACTGAATGTCGGTTCACGTACGGAAGCCGTTTTGATTGCAAAATCTGAAGGCGTGCTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(150-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PCK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

76.168

100

0.769

Multiple sequence alignment