Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   S101395_RS15470 Genome accession   NZ_CP021920
Coordinates   2932423..2933325 (-) Length   300 a.a.
NCBI ID   WP_006638186.1    Uniprot ID   A0A7Y8RX47
Organism   Bacillus sonorensis strain SRCM101395     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2927423..2938325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS15455 (S101395_03119) xerC 2927780..2928694 (-) 915 WP_006638183.1 tyrosine recombinase XerC -
  S101395_RS15460 (S101395_03120) trmFO 2928761..2930065 (-) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  S101395_RS15465 (S101395_03121) topA 2930142..2932217 (-) 2076 WP_006638185.1 type I DNA topoisomerase -
  S101395_RS15470 (S101395_03122) dprA 2932423..2933325 (-) 903 WP_006638186.1 DNA-processing protein DprA Machinery gene
  S101395_RS15475 (S101395_03123) sucD 2933447..2934349 (-) 903 WP_006638187.1 succinate--CoA ligase subunit alpha -
  S101395_RS15480 (S101395_03124) sucC 2934368..2935528 (-) 1161 WP_006638188.1 ADP-forming succinate--CoA ligase subunit beta -
  S101395_RS15485 (S101395_03125) - 2935705..2935983 (-) 279 WP_006638189.1 FlhB-like flagellar biosynthesis protein -
  S101395_RS15490 (S101395_03126) - 2935980..2937671 (-) 1692 WP_006638190.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33176.31 Da        Isoelectric Point: 9.7386

>NTDB_id=234898 S101395_RS15470 WP_006638186.1 2932423..2933325(-) (dprA) [Bacillus sonorensis strain SRCM101395]
MNDQSELLILLRLYGILSPSLLSKWWKEDPSLSLSEETSHPLKKLSNEKISASSIRKLAEKELPKAKRLIKTYSDNGIGM
IAISSPDYPACLKTIHDPPPVLFLKGKKTFLNENRLIGIVGTRDPSSYGKSVVRHLAGELSNKDWTIVSGLAKGIDGLAH
KETIRTNGKTIGVIAGGFDHIYPRENRLLARHMAESHLLVSEHLPHIKPQKWHFPMRNRLISGLTEGIVVIQGKERSGSL
ITAYQALEQGREVFAVPGSIFDQNSQGPARLIQEGAKLVAGIDDILDELPGFKVQYTDPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=234898 S101395_RS15470 WP_006638186.1 2932423..2933325(-) (dprA) [Bacillus sonorensis strain SRCM101395]
ATGAATGATCAGAGCGAGCTGTTGATTTTGCTCCGCCTGTATGGAATCCTTTCGCCTTCCCTGTTATCCAAATGGTGGAA
GGAAGATCCTTCTTTATCGCTTTCAGAAGAAACATCCCATCCTCTAAAAAAGCTGTCAAATGAAAAGATCAGTGCAAGCT
CCATCCGTAAGCTCGCCGAAAAAGAGCTTCCAAAAGCAAAACGGCTGATAAAAACCTACAGCGATAACGGAATCGGCATG
ATCGCGATTTCGTCCCCTGACTATCCAGCCTGTCTGAAAACGATTCACGATCCGCCCCCCGTTCTTTTTTTAAAAGGAAA
GAAAACGTTTCTTAATGAAAACCGCCTTATCGGTATCGTGGGTACCCGAGATCCTTCATCATACGGAAAAAGCGTTGTCC
GCCACCTTGCCGGGGAGCTCAGCAATAAAGACTGGACGATCGTCAGCGGGCTCGCAAAAGGGATTGACGGTCTTGCCCAC
AAGGAGACCATCCGTACAAACGGAAAAACGATCGGCGTCATCGCCGGCGGATTCGACCACATATATCCCCGTGAAAACCG
TCTTCTTGCCCGGCACATGGCGGAAAGTCATTTGCTGGTGTCAGAGCACCTTCCCCATATAAAACCTCAAAAATGGCACT
TTCCGATGAGAAATCGGCTGATCAGCGGCTTAACCGAAGGAATCGTTGTCATTCAAGGCAAAGAAAGAAGCGGCTCGCTC
ATTACCGCCTATCAGGCGCTGGAACAGGGAAGAGAGGTATTTGCGGTGCCGGGTTCAATTTTTGACCAGAACTCCCAAGG
CCCGGCCAGATTGATCCAGGAAGGGGCGAAACTTGTAGCCGGCATTGATGACATTCTCGACGAACTTCCGGGTTTTAAAG
TGCAATATACGGATCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RX47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

58.194

99.667

0.58

Multiple sequence alignment