Detailed information NTG0234897

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S101395_RS15440
• Genome accession: NZ_CP021920
• Coordinates: 2924984..2925763 (-)
• Length: 259 a.a.
• NCBI ID: WP_006638180.1
• Uniprot ID: A0A6I7F231
• Organism: Bacillus sonorensis strain SRCM101395
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2919984..2930763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101395_RS15410 (S101395_03109)	fliH	2920039..2920806 (-)	768	WP_034325767.1	flagellar assembly protein FliH	-
S101395_RS15415 (S101395_03110)	fliG	2920790..2921806 (-)	1017	WP_029418507.1	flagellar motor switch protein FliG	-
S101395_RS15420 (S101395_03111)	fliF	2921820..2923421 (-)	1602	WP_006638176.1	flagellar basal-body MS-ring/collar protein FliF	-
S101395_RS15425 (S101395_03112)	fliE	2923472..2923789 (-)	318	WP_006638177.1	flagellar hook-basal body complex protein FliE	-
S101395_RS15430 (S101395_03113)	flgC	2923802..2924254 (-)	453	WP_006638178.1	flagellar basal body rod protein FlgC	-
S101395_RS15435 (S101395_03114)	flgB	2924254..2924643 (-)	390	WP_006638179.1	flagellar basal body rod protein FlgB	-
S101395_RS15440 (S101395_03116)	codY	2924984..2925763 (-)	780	WP_006638180.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S101395_RS15445 (S101395_03117)	hslU	2925804..2927207 (-)	1404	WP_006638181.1	HslU--HslV peptidase ATPase subunit	-
S101395_RS15450 (S101395_03118)	hslV	2927224..2927766 (-)	543	WP_006638182.1	ATP-dependent protease subunit HslV	-
S101395_RS15455 (S101395_03119)	xerC	2927780..2928694 (-)	915	WP_006638183.1	tyrosine recombinase XerC	-
S101395_RS15460 (S101395_03120)	trmFO	2928761..2930065 (-)	1305	WP_006638184.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29087.45 Da
• Isoelectric Point: 4.8196

>NTDB_id=234897 S101395_RS15440 WP_006638180.1 2924984..2925763(-) (codY) [Bacillus sonorensis strain SRCM101395]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=234897 S101395_RS15440 WP_006638180.1 2924984..2925763(-) (codY) [Bacillus sonorensis strain SRCM101395]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTCCGCGACGTCATCGATTCAAACATTTTCGTTGTCAGCCGCAGAGGTAAGCTCCTCGGCTTCTCAATTA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTTCCTGAAGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCAAACCTGGATATTAACAGCGAATATACGGCGTTCCCTGTTGAAAACCGCGATCTTTTCCA
AGCGGGACTGACGACGATCGTACCGATTATCGGAGGAGGCGAAAGACTGGGAACATTGATTCTTTCACGCCTTCAGGAGA
AATTTGAAGATGATGATTTGATCCTTGCCGAATACGGCGCAACTGTTGTCGGAATGGAGATTCTCAGAGAAAAGGCCGAG
GAAATCGAAGAGGAAGCCCGCAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCATTATCATACAGTGAGCTTGAAGCGAT
TGAACATATCTTTGAAGAGCTTGACGGAAACGAAGGCCTGCTTGTCGCGAGTAAAATCGCCGACCGAGTCGGCATTACGC
GCTCCGTCATCGTGAATGCCTTGCGAAAACTCGAGAGCGCCGGTGTTATTGAATCCAGATCATTAGGGATGAAAGGCACA
TATATTAAAGTGCTCAACAACAAATTCCTCATGGAGCTTGAAAAACTGAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A6I7F231

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.981	100	0.95
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467