Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CDO84_RS12980 Genome accession   NZ_CP021911
Coordinates   2562606..2564966 (-) Length   786 a.a.
NCBI ID   WP_040082298.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2557606..2569966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS12960 (CDO84_12960) - 2557679..2559235 (+) 1557 WP_040082300.1 SH3 domain-containing protein -
  CDO84_RS12965 (CDO84_12965) dtd 2559262..2559702 (-) 441 WP_040082299.1 D-aminoacyl-tRNA deacylase -
  CDO84_RS12970 (CDO84_12970) relA 2559715..2561919 (-) 2205 WP_003229747.1 GTP diphosphokinase -
  CDO84_RS12975 (CDO84_12975) - 2562088..2562600 (-) 513 WP_014477521.1 adenine phosphoribosyltransferase -
  CDO84_RS12980 (CDO84_12980) recJ 2562606..2564966 (-) 2361 WP_040082298.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CDO84_RS12985 (CDO84_12985) - 2565033..2565356 (-) 324 WP_040082297.1 lipopolysaccharide assembly LapA domain-containing protein -
  CDO84_RS12990 (CDO84_12990) - 2565431..2565928 (-) 498 WP_040082295.1 cation:proton antiporter regulatory subunit -
  CDO84_RS12995 (CDO84_12995) secDF 2566084..2568297 (-) 2214 WP_040082294.1 protein translocase subunit SecDF -
  CDO84_RS13000 (CDO84_13000) comN 2568336..2568632 (-) 297 WP_040082293.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87941.50 Da        Isoelectric Point: 5.0461

>NTDB_id=234815 CDO84_RS12980 WP_040082298.1 2562606..2564966(-) (recJ) [Bacillus sp. MD-5]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCSYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVERQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLKAEDVPNLRSRLNEIADNTLTEEDFVPVQEVDLVCSVEDITVESITEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIKNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTLLQTEGLRQEVQVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=234815 CDO84_RS12980 WP_040082298.1 2562606..2564966(-) (recJ) [Bacillus sp. MD-5]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAACT
ATCGGCTCAAGTTGATTTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTTTCCTTGATCATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCAAAAGAACTC
GGACTGGATGTCATCATTACAGATCATCACGAACCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCGGGCTGCTCTTACCCGTTTAAAGAGCTTGCAGGGGTCGGAGTCGCGTTTAAGCTGGCCCATGCTTTATTGGGTGAAC
TTCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACCATTGCTGACCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCGGACAAACCGGCTCGGCTTAAAAGAACTGATTAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACTGTTGGATTTCAGCTCGCTCCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGACC
CAGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACGGCAAGGGCTCGATCAAACTGCAATTGT
CGTGGCAAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCCTCAAAGCTTGTGGACCGTTTCTATCGCCCTGCTA
TTGTGCTTGGCATTGATGAAGAAAAGGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGGGGATTTAATTTATTTGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCTGCGGGGATGACGCTCAAAGCCGAGGATGT
GCCGAATTTGCGAAGCAGGCTGAATGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTGTTCCTGTACAGGAAGTCG
ACCTTGTCTGCAGCGTCGAGGACATTACAGTTGAAAGCATCACAGAAATGAACATGCTTTCTCCTTTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGGAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT
GACGATCAAAAATGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTACCGGGAT
CAAGAATTTCCATTGTCGGTGAGATGTCAATCAACGAATGGAACAATCGGAAAAAACCGCAGCTTATGATAAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTGGGAAGATACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAAACTGAAGGCCTTCGTCAAGAAGTGCAGGTCATCA
GCTCAGAAGATCAAGCAAAGGCGTTTGACCTCGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGAAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCGAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGATGTGAAAAAACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGCAAAGAAACGTGACTTAACAGACTCACAAACATATCAGGCGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

98.219

100

0.982

Multiple sequence alignment