Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CDO84_RS12905 Genome accession   NZ_CP021911
Coordinates   2545474..2547870 (-) Length   798 a.a.
NCBI ID   WP_040082303.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540474..2552870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS12885 (CDO84_12885) - 2543058..2544119 (-) 1062 WP_040082305.1 AI-2E family transporter -
  CDO84_RS12890 (CDO84_12890) - 2544537..2544668 (-) 132 WP_014664797.1 DUF3918 family protein -
  CDO84_RS12895 (CDO84_12895) - 2544690..2544881 (-) 192 WP_003225893.1 hypothetical protein -
  CDO84_RS12900 (CDO84_12900) - 2544893..2545417 (-) 525 WP_082032957.1 hypothetical protein -
  CDO84_RS12905 (CDO84_12905) recD2 2545474..2547870 (-) 2397 WP_040082303.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CDO84_RS12910 (CDO84_12910) - 2547895..2548515 (-) 621 WP_206696623.1 tetratricopeptide repeat protein -
  CDO84_RS12915 (CDO84_12915) mnmA 2548601..2549716 (-) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  CDO84_RS12920 (CDO84_12920) - 2549744..2550886 (-) 1143 WP_040082302.1 cysteine desulfurase family protein -
  CDO84_RS12925 (CDO84_12925) cymR 2550905..2551321 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  CDO84_RS12930 (CDO84_12930) - 2551524..2552789 (+) 1266 WP_014664802.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89141.69 Da        Isoelectric Point: 4.9548

>NTDB_id=234814 CDO84_RS12905 WP_040082303.1 2545474..2547870(-) (recD2) [Bacillus sp. MD-5]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAKEDQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFSHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=234814 CDO84_RS12905 WP_040082303.1 2545474..2547870(-) (recD2) [Bacillus sp. MD-5]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTTAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATAGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACACACCCGAAATTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAGATACCGACGACTAAGGAAGGCATTATACAATATTTATCGAGTGATTTATT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAACAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCGAGGCTCTCAAAAAAGAAAGCAGACACGCTGGCCGGTGCCTTGCAGCGGCATCAGGGG
CTGGAGCAAATCATGATTTCCCTGAACCAGTTTGGCTTTGGCCCGCAGCTGTCCATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAAATTCAAGAAAATCCTTATCAGCTTGTGAAGGACGTAGAAGGCATCGGGTTTGGGAAAGCGGATG
AGCTGGGCGGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCGATTCTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAGCAGCTGATCATCGACACCCAATCACTGTTAAACCAGTCAGCAAA
GGAAGATCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCTCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGACGCTGTTATTTCCCATCGCTGTTTTACGCTGAACAAAATGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAGTTTTTGCTCGCTTTGGGGGAATTGGAAGAACGGATGAACGTTCAGTATGC
CCCCAGCCAGAAAGAAGCGATTCAAAAAGCTCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCAGGAACAGGGAAAA
CGACGGTTATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGAATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTTCCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATCTATTCAAGGCGATCCCTGATCATATCCAAATC
ATCATTGTCGGAGACGAAGACCAGTTGCCTTCTGTAGGTCCGGGCCAAGTGCTGAGAGACCTACTGGCATCCCAGGTGAT
TCCCACGGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCCACAAAGGACCGATCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAAGTT
GTTGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATCAATGAGTTGAATGTGATGCTGCAGGATATTTTAAATCCTCCGAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGTGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTAAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CATTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTTGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.996

99.875

0.989

Multiple sequence alignment