Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CDO84_RS07725 Genome accession   NZ_CP021911
Coordinates   1537844..1538623 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. MD-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532844..1543623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS07705 (CDO84_07705) trmFO 1533537..1534844 (+) 1308 WP_014663960.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CDO84_RS07710 (CDO84_07710) xerC 1534912..1535826 (+) 915 WP_040083178.1 tyrosine recombinase XerC -
  CDO84_RS07715 (CDO84_07715) clpQ 1535839..1536384 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  CDO84_RS07720 (CDO84_07720) hslU 1536392..1537804 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  CDO84_RS07725 (CDO84_07725) codY 1537844..1538623 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CDO84_RS07730 (CDO84_07730) flgB 1539004..1539393 (+) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  CDO84_RS07735 (CDO84_07735) flgC 1539393..1539845 (+) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  CDO84_RS07740 (CDO84_07740) fliE 1539856..1540176 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  CDO84_RS07745 (CDO84_07745) fliF 1540222..1541832 (+) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  CDO84_RS07750 (CDO84_07750) fliG 1541845..1542861 (+) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  CDO84_RS07755 (CDO84_07755) fliH 1542854..1543606 (+) 753 WP_040083794.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=234793 CDO84_RS07725 WP_003220850.1 1537844..1538623(+) (codY) [Bacillus sp. MD-5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=234793 CDO84_RS07725 WP_003220850.1 1537844..1538623(+) (codY) [Bacillus sp. MD-5]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACTACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTTGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGCATTACAC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTAAACAACAAATTCTTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment