Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CC204_RS01955 Genome accession   NZ_CP021874
Coordinates   419048..420895 (+) Length   615 a.a.
NCBI ID   WP_088268564.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 414048..425895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS01940 msrA 415205..416026 (+) 822 WP_088268562.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CC204_RS01945 - 416207..416653 (+) 447 WP_087639883.1 MarR family winged helix-turn-helix transcriptional regulator -
  CC204_RS01950 - 416653..419034 (+) 2382 WP_088268563.1 ABC transporter ATP-binding protein -
  CC204_RS01955 rcrQ 419048..420895 (+) 1848 WP_088268564.1 ABC transporter ATP-binding protein Regulator
  CC204_RS01960 - 421086..422057 (+) 972 WP_088268565.1 diaminopimelate dehydrogenase -
  CC204_RS01965 nrdI 422117..422551 (-) 435 WP_088271634.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  CC204_RS01970 - 422712..423173 (+) 462 WP_088268566.1 phage tail protein -
  CC204_RS01975 thiT 423495..424088 (+) 594 WP_088268567.1 energy-coupled thiamine transporter ThiT -
  CC204_RS01980 - 424342..424740 (-) 399 WP_088268568.1 VOC family protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 68308.94 Da        Isoelectric Point: 5.9106

>NTDB_id=234311 CC204_RS01955 WP_088268564.1 419048..420895(+) (rcrQ) [Enterococcus wangshanyuanii strain MN05]
MAEEKQKSPRRGGGPGQIAPVEKAKDFKGTIKKLVSYIGAYKIPVFFVMIFAIASTVFNIWGPKILSKAITELFNGLIKK
YQGTGGIDFEKIGGILLFMLGLYLVASLFGIIQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITNDV
DTLGQSLNQSITQLITSVFTIIGVIVMMLSISVKMTGIAILIVPISFILIMIVVKNSQKYFKTQQEYLGVINGKVEETIG
GYNIVRLFNDEENSLNEFKEQNDVLFKSAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGGIMAYNGSITVGDIQAFIQYVR
NLTQPIAQLAQVSNMLQSMAAAAERVFEFLGEEEEDQTVPNPVKIDKAKGMVDFDHVQFGYTPDKIVIHDFSSHVEPGQT
VAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKEFNRADLRKNIGMVLQDTWLFKGTIMENLRYGRLEATDEEVYA
AAKAAHVHHFIQTLPGGYNMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMAGRTS
FVIAHRLSTIKDADKILYMQDGDIKEQGTHDELLAEGGYYASLYNSQFEDLADEA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=234311 CC204_RS01955 WP_088268564.1 419048..420895(+) (rcrQ) [Enterococcus wangshanyuanii strain MN05]
ATGGCAGAAGAAAAACAAAAAAGCCCTCGTCGCGGCGGTGGCCCTGGACAGATTGCTCCAGTAGAAAAAGCAAAAGATTT
CAAAGGAACGATCAAAAAATTAGTGTCGTACATCGGCGCCTATAAAATTCCTGTATTCTTTGTGATGATCTTTGCGATCG
CCTCAACCGTATTCAATATTTGGGGACCAAAAATCTTATCTAAAGCAATCACAGAATTATTTAATGGTTTAATCAAGAAA
TATCAGGGAACCGGTGGGATCGATTTTGAGAAAATCGGTGGTATCCTATTATTCATGCTAGGTTTATACCTTGTTGCATC
TTTATTCGGGATCATCCAAGGCTGGATCATGTCGACGATTTCGCAAAAAATCACGTATCGTATGAGAAAAGAAATTTCAG
AAAAAATCAATCGTATGCCGATGAATTATTTTGAAAGTCGGACAACAGGTGAAGTTTTATCACGTATCACAAATGATGTG
GACACGTTAGGTCAATCACTGAACCAATCAATTACTCAATTGATTACATCTGTCTTCACTATCATCGGAGTTATCGTGAT
GATGCTTTCGATCTCAGTTAAAATGACGGGAATTGCGATTTTGATCGTACCGATTTCCTTTATTTTGATCATGATCGTCG
TGAAAAACTCACAAAAATACTTTAAAACACAACAAGAATATCTTGGTGTGATCAATGGTAAAGTGGAAGAAACAATTGGC
GGCTATAACATCGTTCGTTTATTCAATGATGAAGAAAACTCATTGAATGAATTTAAAGAACAAAATGATGTCCTATTCAA
ATCAGCCTGGAAATCACAATTTCTGTCAGGTTTGATGCAGCCGATCATGAACTTTGTCGGAAACTTAGGGTATGTCGCTG
TTGCGATCGTCGGCGGGATCATGGCGTATAATGGTTCGATCACAGTTGGGGATATTCAAGCGTTTATCCAATATGTGCGT
AACTTAACACAGCCGATCGCTCAATTAGCGCAAGTGTCTAATATGCTTCAATCAATGGCGGCAGCTGCTGAACGTGTCTT
CGAATTTCTTGGTGAGGAAGAAGAAGATCAAACGGTACCAAATCCAGTTAAAATCGATAAAGCAAAAGGGATGGTCGACT
TTGACCATGTACAATTTGGTTATACACCAGATAAAATCGTTATCCATGATTTCAGTTCCCATGTGGAACCAGGACAGACT
GTTGCAATCGTTGGTCCAACGGGCGCAGGGAAAACAACAATGGTCAAATTACTGATGCGTTTTTACGATGTCAATTCCGG
TGCAATCAAAATTGATGGCCACAATATCAAAGAGTTCAATCGTGCCGACCTACGTAAGAATATCGGAATGGTTTTACAAG
ATACTTGGTTATTCAAAGGAACCATCATGGAAAATCTTCGGTATGGTCGTCTTGAAGCAACGGATGAAGAAGTCTATGCT
GCTGCGAAAGCGGCACACGTTCATCATTTTATCCAAACATTGCCTGGCGGCTACAATATGGAATTGAATGAAGAATCTTC
TAATATATCTCAAGGTCAAAAACAATTATTGACGATCGCCCGTGCTATTTTAGCCGACAAACCGATCTTGATCCTAGACG
AAGCAACTTCTTCTGTTGATACACGAACAGAAGGATTGATCCAGGAAGCGATGAATAACTTAATGGCTGGACGTACGTCA
TTTGTTATCGCTCACCGTTTATCTACGATCAAAGATGCAGATAAGATTCTTTATATGCAAGATGGAGACATCAAAGAACA
AGGAACACACGATGAATTACTTGCTGAAGGTGGCTACTATGCATCGCTTTACAATTCTCAGTTTGAGGATTTAGCAGACG
AAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-325)

ABC transporter (ABC_tran)

(389-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.63

94.797

0.489

Multiple sequence alignment