Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BB162_RS06640 Genome accession   NZ_CP021869
Coordinates   1272938..1274692 (-) Length   584 a.a.
NCBI ID   WP_000851088.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267938..1279692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB162_RS06615 (BB162_06615) mvaD 1268367..1269311 (-) 945 WP_000348822.1 diphosphomevalonate decarboxylase -
  BB162_RS06620 (BB162_06620) mvk 1269293..1270171 (-) 879 WP_000659719.1 mevalonate kinase -
  BB162_RS06625 (BB162_06625) - 1270287..1271516 (-) 1230 WP_000489528.1 sensor histidine kinase -
  BB162_RS06630 (BB162_06630) - 1271516..1272202 (-) 687 WP_001264417.1 response regulator transcription factor -
  BB162_RS06635 (BB162_06635) - 1272204..1272830 (-) 627 WP_000449644.1 GTP pyrophosphokinase -
  BB162_RS06640 (BB162_06640) rcrQ 1272938..1274692 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  BB162_RS06645 (BB162_06645) rcrP 1274682..1276499 (-) 1818 WP_000481812.1 ABC transporter ATP-binding protein Regulator
  BB162_RS06650 (BB162_06650) - 1276546..1276986 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  BB162_RS06655 (BB162_06655) - 1277255..1279327 (+) 2073 WP_000726928.1 surface-anchored 5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64482.76 Da        Isoelectric Point: 7.4327

>NTDB_id=234239 BB162_RS06640 WP_000851088.1 1272938..1274692(-) (rcrQ) [Streptococcus agalactiae strain SG-M6]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLVGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQVNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRV
FEFLNETNMQEDKHKVLNLPKFKGHVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDTWLFEGTIKENLIFNQTTISDDEVQEAAKAVGIHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GNHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=234239 BB162_RS06640 WP_000851088.1 1272938..1274692(-) (rcrQ) [Streptococcus agalactiae strain SG-M6]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTATCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTGACGACTATTATTCAAAAATTTGCTCAAGGTATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATGGTTGCATCTACAGTGTTATTGGTTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTAAAAAGCAACAGGTGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACACAACATTGTTACTAGTCATAATGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGACGTGTT
TTTGAATTTTTAAATGAAACAAATATGCAAGAGGATAAACACAAAGTGTTAAATCTTCCTAAGTTTAAGGGGCATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAGGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATACATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAACCAGACGACAATCAGTGATGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTATACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGACTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAATCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-510)

ABC transporter transmembrane region (ABC_membrane)

(26-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

75.952

98.973

0.752

Multiple sequence alignment