Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CA592_RS14795 Genome accession   NZ_CP021838
Coordinates   2776339..2778693 (+) Length   784 a.a.
NCBI ID   WP_088223710.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus strain 52-1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2771339..2783693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA592_RS14770 (CA592_14770) - 2771564..2772844 (+) 1281 WP_004889301.1 replication-associated recombination protein A -
  CA592_RS14775 (CA592_14775) cymR 2772918..2773334 (+) 417 WP_004889303.1 cysteine metabolism transcriptional regulator CymR -
  CA592_RS14780 (CA592_14780) - 2773350..2774495 (+) 1146 WP_004889305.1 cysteine desulfurase family protein -
  CA592_RS14785 (CA592_14785) mnmA 2774510..2775607 (+) 1098 WP_035018507.1 tRNA 2-thiouridine(34) synthase MnmA -
  CA592_RS14790 (CA592_14790) - 2775670..2776326 (+) 657 WP_004889307.1 tetratricopeptide repeat protein -
  CA592_RS14795 (CA592_14795) recD2 2776339..2778693 (+) 2355 WP_088223710.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CA592_RS14800 (CA592_14800) - 2778796..2778987 (+) 192 WP_004889309.1 hypothetical protein -
  CA592_RS14805 (CA592_14805) - 2778998..2779138 (+) 141 WP_004889310.1 YrzQ family protein -
  CA592_RS14810 (CA592_14810) - 2779246..2780304 (+) 1059 WP_088223711.1 AI-2E family transporter -
  CA592_RS14815 (CA592_14815) alaS 2780613..2783246 (+) 2634 WP_088223712.1 alanine--tRNA ligase -
  CA592_RS14820 (CA592_14820) - 2783330..2783596 (+) 267 WP_004889315.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88248.82 Da        Isoelectric Point: 5.0854

>NTDB_id=233725 CA592_RS14795 WP_088223710.1 2776339..2778693(+) (recD2) [Anoxybacillus flavithermus strain 52-1A]
MGLQQQLDLDGRSFIKGVHVGTIFHNEDNLYSVIRVRVEETNEPHIEKDVVVTGYFPLLGEYDTYTFFGSFKEHPRFGKQ
YVVDHFRKEFPETKEGVIQYLSGGMFKGIGKKTATAIVETLGERAISKILEDPDVLANVPKLTKAKAKQLYETLREHEGL
EQIMIALSQFGFGPQLSMKIYQVYKDETLQIIRTNPYQLVEDVEGIGFGRADDLGLQLGISGNHPDRIRAGCLYVIEQHC
MQEGHVYMTYEQLLTEVKQLLEAKRQELVDVACISREMIHLSEEGKLIVEEDRFYIPSLYFAEKGIVSNVKRLLQQSDMS
TFSEAEFLLALGEWEEEANIQYSQKQKEAIQQALCSPLFILTGGPGTGKTTVINGIVHLFAKLHGLSLDPVSYDADEPFP
ILLAAPTGRAAKRMTESTGLPAMTIHRLLGWSGDGFQRGEDEPINGKLLIVDEMSMVDTWLANQLLKSVPSSMQVIFVGD
EDQLPSVGPGQVLKDLLRANVIPTVRLTDIYRQAEGSSIISLAHAIKDGNIPHDLTIPQKDRSFIRCTSAQVVDVVKKVA
ENAKQKGYRAKDVQVLAPMYRGHAGIDRLNETLQQLFNPKHDHKRELTFGDVVYRVGDKVLQLVNQPDENVFNGDIGEIV
AIFYANENVEKQDLVVVSFDGNEVTYPKQELHQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKQY
LILCGEEEAFQLGVMRTDDGTRQTTLYEKLTAIISPEQQLLPMEDANIGMEGVTPYDFMENDAT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=233725 CA592_RS14795 WP_088223710.1 2776339..2778693(+) (recD2) [Anoxybacillus flavithermus strain 52-1A]
ATGGGGTTGCAACAACAGTTAGACTTAGACGGACGATCGTTTATTAAAGGCGTCCATGTCGGTACAATTTTTCATAACGA
AGACAATTTATATTCTGTCATTCGTGTGCGTGTGGAAGAAACAAATGAACCGCATATAGAAAAAGATGTTGTTGTGACAG
GCTATTTCCCTTTGCTGGGCGAGTATGATACATATACGTTTTTTGGCTCATTTAAAGAACACCCGCGCTTTGGGAAACAA
TATGTTGTCGATCATTTTCGAAAAGAGTTTCCTGAAACGAAAGAAGGAGTGATTCAATATTTATCGGGCGGAATGTTTAA
AGGGATTGGTAAAAAAACAGCAACTGCCATCGTTGAAACGTTAGGTGAGCGAGCGATTTCAAAAATATTAGAAGATCCCG
ACGTGCTTGCAAACGTGCCAAAGTTGACAAAAGCAAAGGCGAAGCAGCTATATGAGACGTTGCGCGAACATGAAGGATTA
GAACAAATTATGATCGCTTTATCGCAATTTGGCTTTGGGCCTCAATTATCGATGAAAATTTATCAAGTGTACAAAGATGA
AACGTTACAAATCATTCGCACAAATCCGTATCAACTGGTGGAAGATGTTGAAGGAATCGGATTTGGACGTGCAGATGATC
TCGGCTTGCAGCTTGGCATTTCTGGTAATCATCCTGATCGTATTCGGGCAGGTTGTTTATACGTCATTGAACAACATTGC
ATGCAAGAAGGACATGTGTATATGACGTATGAACAGCTGCTTACAGAAGTAAAACAACTGTTAGAAGCAAAACGTCAAGA
ACTTGTCGATGTCGCTTGCATTTCCCGTGAAATGATCCATTTATCTGAAGAAGGAAAGTTAATTGTTGAAGAAGATCGTT
TTTATATCCCTTCGTTATATTTTGCGGAAAAAGGCATCGTGTCAAACGTCAAGCGGCTATTGCAACAATCCGATATGTCA
ACATTTTCTGAAGCGGAATTTTTGCTTGCGCTTGGTGAATGGGAAGAAGAAGCAAACATCCAATATTCGCAAAAACAAAA
AGAGGCGATTCAACAAGCGCTTTGTTCCCCGTTGTTCATTTTAACGGGCGGACCAGGCACAGGAAAAACGACGGTCATTA
ACGGTATCGTTCATTTATTCGCCAAGTTGCACGGGCTATCGCTTGATCCTGTTAGCTATGATGCGGACGAGCCGTTCCCC
ATTTTACTTGCTGCTCCAACTGGACGAGCAGCGAAGCGAATGACGGAATCGACTGGCTTGCCGGCGATGACGATCCATCG
TTTGCTCGGCTGGAGTGGCGACGGGTTTCAACGCGGGGAAGACGAACCGATTAACGGAAAGTTGTTAATTGTCGATGAAA
TGTCAATGGTCGATACGTGGCTAGCGAATCAGTTATTAAAGTCTGTTCCATCATCCATGCAAGTCATTTTCGTTGGCGAT
GAAGACCAATTACCGTCTGTCGGACCGGGACAAGTGTTAAAAGACTTACTTCGTGCCAACGTCATTCCGACCGTTCGCTT
GACAGACATTTATCGTCAGGCAGAAGGTTCGTCGATCATTTCCCTTGCCCATGCGATTAAAGATGGAAACATTCCACATG
ATTTGACGATCCCTCAAAAAGACCGCTCGTTTATTCGTTGTACGAGTGCCCAAGTCGTTGACGTCGTAAAAAAAGTAGCT
GAAAACGCAAAACAAAAAGGATATCGCGCAAAAGATGTTCAAGTGCTCGCACCGATGTATCGCGGTCATGCAGGAATTGA
TCGACTCAATGAGACGCTACAACAATTATTTAATCCAAAACATGATCATAAACGAGAGCTTACGTTTGGCGATGTCGTTT
ATCGCGTAGGCGATAAAGTGTTGCAGCTAGTCAATCAGCCGGATGAAAATGTGTTTAATGGAGACATCGGCGAGATTGTT
GCCATTTTTTATGCAAATGAAAATGTGGAAAAACAAGATCTCGTCGTCGTTTCGTTTGATGGAAATGAAGTGACGTATCC
GAAACAAGAATTGCACCAAATTACGCACGCATATTGTTGTTCGATTCATAAATCGCAAGGAAGCGAATTTCCGATCGTCA
TTTTGCCTGTTGTAAAAAGTTATTATCGCATGTTAAGGCGCAATTTATTATACACAGCCATTACGCGCAGTAAGCAATAT
TTAATTTTATGTGGTGAAGAAGAAGCGTTCCAACTCGGGGTCATGCGAACAGATGACGGAACGAGACAAACGACGTTATA
CGAAAAATTAACAGCGATCATTTCGCCTGAACAACAGTTACTTCCGATGGAAGATGCAAACATCGGAATGGAAGGTGTTA
CCCCGTATGACTTTATGGAAAATGACGCAACATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-657)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.782

100

0.615

Multiple sequence alignment