Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CA592_RS14715 Genome accession   NZ_CP021838
Coordinates   2755644..2758004 (+) Length   786 a.a.
NCBI ID   WP_004889282.1    Uniprot ID   A0A178TAM5
Organism   Anoxybacillus flavithermus strain 52-1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2750644..2763004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA592_RS14695 (CA592_14695) spoVB 2751077..2752600 (-) 1524 WP_088223705.1 stage V sporulation protein B -
  CA592_RS14700 (CA592_14700) - 2752677..2752965 (+) 289 Protein_2857 post-transcriptional regulator -
  CA592_RS14705 (CA592_14705) secDF 2753061..2755307 (+) 2247 WP_088223706.1 protein translocase subunit SecDF -
  CA592_RS14710 (CA592_14710) - 2755309..2755590 (+) 282 Protein_2859 cation transporter dimerization domain-containing protein -
  CA592_RS14715 (CA592_14715) recJ 2755644..2758004 (+) 2361 WP_004889282.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CA592_RS14720 (CA592_14720) - 2757970..2758482 (+) 513 WP_004889284.1 adenine phosphoribosyltransferase -
  CA592_RS14725 (CA592_14725) - 2758582..2760780 (+) 2199 WP_004889286.1 RelA/SpoT family protein -
  CA592_RS14730 (CA592_14730) dtd 2760795..2761235 (+) 441 WP_004889288.1 D-aminoacyl-tRNA deacylase -
  CA592_RS15455 - 2761272..2761445 (-) 174 WP_035018505.1 hypothetical protein -
  CA592_RS14735 (CA592_14735) - 2761578..2762909 (+) 1332 WP_088223707.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89034.88 Da        Isoelectric Point: 5.9863

>NTDB_id=233724 CA592_RS14715 WP_004889282.1 2755644..2758004(+) (recJ) [Anoxybacillus flavithermus strain 52-1A]
MLASKTRWNIQQVNEQQVQMIAQALHITPLVASLLVSRGYHTVEAARSFFERKQSFHSPFLLNDMEKAVERIEKAITNDE
HILIFGDYDADGVSSTVVMVSALREKGANVSFYIPNRFTEGYGPNEQAFRLAKQQGVSLIITVDTGISALHEANVAKQLG
IDLIITDHHEPGPVLPEAYATIHPKISPNYPFKHLAGVGVAFKLAHALIGRVPYEWLDVVAIGTIADLVPLQDENHLLAR
LGIEQFRQTNRPGLQALCKQCGVSHTAVTEDTIAFMIGPRVNAAGRLDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQ
QLVNEITEEAIQLVEQHYRDDRVLVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIAKGSARSIEGFDLFANLS
NCRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDEHFIPITHIDLCCSIPDVSLELIEQMNRLAPFGMGNPK
PRVLFQHVQLDTLRKIGTDQNHLKLLLTEDGKTLEAIGFGFGNIGDEIAPDVHLSVVGELAINEWNNFRKPQLMIQDIAV
NEWQLFDMRHIRHPSKFMASLPKEKRLLIAFHRDTVDALQLSAYADEIVYVSNEQEAIIDVSGKYIVFLDLPPSQQIVKV
LLSCSLPERIYALFYQRENHFFSVLPTREHFKWLYSFLHKRSPFDVRRYADDLARSRGWTKETILFMIQVFKELGFITVE
NGIVSLVCDVQKRDLTESPSYRLKQAQAELEHMFLYSSYSQLKRWFDSLYEEENVNGFKTIRHDCS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=233724 CA592_RS14715 WP_004889282.1 2755644..2758004(+) (recJ) [Anoxybacillus flavithermus strain 52-1A]
ATGTTAGCATCGAAAACCCGTTGGAATATTCAACAAGTAAACGAGCAACAAGTGCAAATGATTGCGCAAGCGCTACATAT
CACTCCGCTCGTTGCTTCATTGCTTGTTAGCCGCGGCTACCATACCGTTGAAGCCGCTCGTTCTTTTTTTGAGCGAAAGC
AATCATTTCACTCACCATTTTTATTAAACGATATGGAAAAAGCGGTTGAGCGAATAGAGAAAGCGATTACAAACGATGAA
CATATTCTCATTTTCGGTGACTATGATGCCGATGGAGTAAGCAGTACAGTCGTCATGGTCAGCGCATTACGAGAAAAAGG
AGCGAATGTGTCTTTTTACATTCCGAATCGTTTTACGGAAGGATACGGACCAAATGAACAAGCGTTTCGACTAGCAAAAC
AACAAGGTGTTTCGCTTATCATTACAGTCGATACAGGCATTTCTGCTTTACATGAAGCCAACGTAGCGAAACAGCTTGGG
ATCGATTTAATTATTACCGATCATCATGAACCTGGTCCGGTACTACCGGAAGCGTACGCAACGATCCATCCGAAAATAAG
TCCGAATTATCCGTTTAAACATTTAGCTGGCGTCGGCGTAGCATTTAAGCTTGCTCATGCGCTTATCGGGCGCGTGCCGT
ATGAATGGTTGGACGTTGTTGCAATCGGGACAATTGCCGATCTCGTTCCGCTTCAAGACGAAAACCATTTACTCGCTCGG
TTGGGCATTGAACAATTTCGTCAAACGAACCGTCCCGGTTTACAGGCACTTTGTAAACAATGTGGCGTATCACATACAGC
TGTGACAGAAGATACGATTGCTTTCATGATCGGTCCGCGCGTTAATGCCGCCGGACGTCTCGATTGCGCTGATCCAGCTG
TTCAGCTGTTGTTGACGACAGATGCACACGAAGCGGACATGCTAGCGGAGCAAATTGATGCAATGAACCGCGAACGTCAA
CAACTTGTTAACGAGATAACCGAAGAAGCGATTCAACTTGTCGAGCAACATTATAGAGATGATCGTGTATTAGTTGTGGC
GAAAGAAGGATGGAATGTCGGTGTTATTGGCATTGTGGCATCTCGTTTAGTCGAAAAGTTTTACCGTCCGACGATCGTGT
TAAGCATTGATCAAGAAAAAGGAATAGCCAAAGGATCAGCGCGAAGTATTGAGGGATTTGACTTATTTGCGAACTTGTCA
AACTGTCGCGATATTTTGCCACATTTTGGAGGGCATCCGATGGCGGCCGGAATGACGCTTTCTTTTCATGATGTAGATGA
ATTACGTCGTCGCCTAAACGAAGCAGCGGAGCAACAATTAACGGACGAACATTTCATTCCTATCACTCACATCGATTTAT
GTTGCTCCATCCCAGACGTTTCGCTTGAACTTATCGAACAAATGAATCGGCTTGCACCATTTGGAATGGGGAATCCGAAG
CCACGTGTCCTTTTCCAACATGTGCAACTCGATACGTTGCGAAAAATTGGAACGGATCAAAACCACTTAAAATTGTTGTT
AACGGAAGATGGAAAAACGTTAGAAGCGATCGGATTCGGTTTTGGCAACATCGGTGACGAAATTGCACCGGACGTTCATC
TTTCGGTCGTAGGAGAACTTGCTATTAACGAATGGAACAACTTTCGAAAGCCACAGTTAATGATTCAAGATATAGCAGTG
AATGAGTGGCAATTGTTTGATATGCGTCATATTCGTCATCCAAGTAAGTTCATGGCGTCGCTACCGAAAGAAAAGCGGTT
ATTGATCGCTTTTCATCGCGACACAGTAGACGCATTGCAATTGTCGGCATATGCAGATGAAATTGTATATGTGTCGAACG
AACAAGAAGCGATAATTGATGTAAGTGGAAAGTATATTGTTTTTCTTGATTTGCCTCCGTCACAGCAAATCGTTAAAGTT
TTATTAAGTTGTAGTTTACCCGAACGCATTTATGCGTTATTCTATCAAAGGGAGAATCACTTCTTTAGCGTATTGCCAAC
GCGTGAACATTTTAAGTGGTTATATTCATTTTTGCATAAGCGTAGTCCGTTTGATGTGCGACGTTACGCTGATGACTTAG
CTCGCTCGCGCGGATGGACAAAAGAAACGATTTTGTTTATGATTCAAGTGTTTAAAGAACTTGGCTTTATAACTGTTGAA
AACGGAATCGTTTCTTTAGTTTGCGATGTCCAAAAACGGGATTTAACGGAATCGCCTTCTTACCGACTGAAACAAGCGCA
GGCAGAGCTCGAGCATATGTTTTTATACTCATCTTATTCCCAACTGAAACGTTGGTTTGATTCATTGTATGAGGAGGAAA
ATGTCAATGGATTTAAAACAATACGTCACGATTGTTCCTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(81-224)

RecJ OB domain (RecJ_OB)

(451-557)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(564-766)

DHHA1 domain (DHHA1)

(313-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178TAM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.054

98.855

0.534

Multiple sequence alignment