Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CCZ24_RS09765 Genome accession   NZ_CP021773
Coordinates   1914927..1915859 (-) Length   310 a.a.
NCBI ID   WP_000138503.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909927..1920859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS09765 (CCZ24_09625) amiF 1914927..1915859 (-) 933 WP_000138503.1 ATP-binding cassette domain-containing protein Regulator
  CCZ24_RS09770 (CCZ24_09630) oppD 1915856..1916905 (-) 1050 WP_000410289.1 ABC transporter ATP-binding protein Regulator
  CCZ24_RS09775 (CCZ24_09635) - 1916918..1917949 (-) 1032 WP_000764053.1 ABC transporter permease -
  CCZ24_RS09780 (CCZ24_09640) - 1917959..1918873 (-) 915 WP_000598967.1 ABC transporter permease -
  CCZ24_RS09785 (CCZ24_09645) - 1918988..1920646 (-) 1659 WP_001118750.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34869.74 Da        Isoelectric Point: 6.8964

>NTDB_id=233368 CCZ24_RS09765 WP_000138503.1 1914927..1915859(-) (amiF) [Streptococcus agalactiae strain B105]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNKPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=233368 CCZ24_RS09765 WP_000138503.1 1914927..1915859(-) (amiF) [Streptococcus agalactiae strain B105]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGCGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAAACCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.221

99.355

0.539
  amiF Streptococcus thermophilus LMG 18311

53.896

99.355

0.535
  amiF Streptococcus salivarius strain HSISS4

54.098

98.387

0.532

Multiple sequence alignment