Detailed information NTG0023314

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PD_RS04605
• Genome accession: NC_004556
• Coordinates: 1092666..1093859 (+)
• Length: 397 a.a.
• NCBI ID: WP_004572891.1
• Uniprot ID: B2I4S3
• Organism: Xylella fastidiosa Temecula1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1087666..1098859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PD_RS13050 (PD0877)	-	1087899..1089071 (-)	1173	Protein_893	anthranilate synthase component I family protein	-
PD_RS13395	-	1089053..1089337 (-)	285	WP_118853459.1	hypothetical protein	-
PD_RS04590 (PD0878)	-	1089690..1090496 (+)	807	WP_004572888.1	TatD family hydrolase	-
PD_RS04595 (PD0879)	-	1090710..1091270 (-)	561	WP_004572889.1	HNH endonuclease	-
PD_RS04600 (PD0880)	-	1091620..1092093 (-)	474	WP_004572890.1	hypothetical protein	-
PD_RS04605 (PD0881)	pilA	1092666..1093859 (+)	1194	WP_004572891.1	signal recognition particle-docking protein FtsY	Machinery gene
PD_RS04610 (PD0882)	mutY	1093959..1095008 (+)	1050	WP_004572892.1	A/G-specific adenine glycosylase	-
PD_RS04615 (PD0883)	-	1095043..1095315 (+)	273	WP_011097829.1	oxidative damage protection protein	-
PD_RS11725 (PD0884)	-	1095369..1095902 (+)	534	WP_228446171.1	DUF2726 domain-containing protein	-
PD_RS04620 (PD0885)	-	1096031..1096765 (+)	735	WP_004572895.1	YebC/PmpR family DNA-binding transcriptional regulator	-
PD_RS04625 (PD0886)	ruvC	1096885..1097406 (+)	522	WP_011097831.1	crossover junction endodeoxyribonuclease RuvC	-
PD_RS04630 (PD0887)	ruvA	1097492..1098076 (+)	585	WP_004572897.1	Holliday junction branch migration protein RuvA	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 42821.04 Da
• Isoelectric Point: 8.0970

>NTDB_id=23314 PD_RS04605 WP_004572891.1 1092666..1093859(+) (pilA) [Xylella fastidiosa Temecula1]
MLSFLRRKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQGQTSTTPLLSSADQPALLTHSTSSAFTELVISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA

Nucleotide

• Length: 1194 bp

>NTDB_id=23314 PD_RS04605 WP_004572891.1 1092666..1093859(+) (pilA) [Xylella fastidiosa Temecula1]
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGGGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGTAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCAATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAAATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTTGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (105-170)

• SRP54-type protein, GTPase domain (SRP54) (189-390)

3D structure

• AlphaFold DB: B2I4S3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	42.857	89.924	0.385