Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   CDH85_RS01610 Genome accession   NZ_CP021769
Coordinates   281340..282314 (-) Length   324 a.a.
NCBI ID   WP_001008574.1    Uniprot ID   A0AAV3JGK6
Organism   Streptococcus agalactiae strain B509     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276340..287314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH85_RS01575 (CDH85_01565) pepA 276403..277470 (+) 1068 WP_001281323.1 glutamyl aminopeptidase -
  CDH85_RS01580 (CDH85_01570) proC 277540..278310 (+) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  CDH85_RS01585 (CDH85_01575) - 278331..278996 (-) 666 WP_000008113.1 type II CAAX endopeptidase family protein -
  CDH85_RS01590 (CDH85_01580) - 279065..279520 (-) 456 WP_000905673.1 hypothetical protein -
  CDH85_RS10855 (CDH85_01585) - 279561..279698 (-) 138 WP_001865900.1 hypothetical protein -
  CDH85_RS01600 (CDH85_01590) - 279757..279963 (-) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  CDH85_RS01605 (CDH85_01595) - 280115..281308 (-) 1194 WP_000047534.1 acetate kinase -
  CDH85_RS01610 (CDH85_01600) comYH 281340..282314 (-) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  CDH85_RS01615 (CDH85_01605) comGG 282429..282800 (-) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  CDH85_RS01620 (CDH85_01610) comGF 282778..283239 (-) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF -
  CDH85_RS01625 (CDH85_01615) comGE 283193..283492 (-) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  CDH85_RS01630 (CDH85_01620) comYD 283464..283877 (-) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  CDH85_RS01635 (CDH85_01625) comGC/cglC 283852..284181 (-) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  CDH85_RS01640 (CDH85_01630) comYB 284178..285221 (-) 1044 WP_275426763.1 competence type IV pilus assembly protein ComGB Machinery gene
  CDH85_RS01645 (CDH85_01635) comYA 285115..286086 (-) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  CDH85_RS01655 (CDH85_01645) - 286259..286624 (-) 366 WP_000285373.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37046.02 Da        Isoelectric Point: 4.5224

>NTDB_id=233134 CDH85_RS01610 WP_001008574.1 281340..282314(-) (comYH) [Streptococcus agalactiae strain B509]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=233134 CDH85_RS01610 WP_001008574.1 281340..282314(-) (comYH) [Streptococcus agalactiae strain B509]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment