Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TT_RS09080 Genome accession   NC_005835
Coordinates   1690782..1692266 (+) Length   494 a.a.
NCBI ID   WP_011174141.1    Uniprot ID   Q72GR3
Organism   Thermus thermophilus HB27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1685782..1697266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT_RS09060 (TT_C1781) - 1686773..1687669 (+) 897 WP_011174137.1 DMT family transporter -
  TT_RS09065 (TT_C1782) - 1687666..1688478 (+) 813 WP_011174138.1 DMT family transporter -
  TT_RS09070 (TT_C1783) - 1688480..1689619 (+) 1140 WP_011174139.1 MFS transporter -
  TT_RS09075 (TT_C1784) - 1689601..1690662 (-) 1062 WP_226980282.1 Fic family protein -
  TT_RS09080 (TT_C1785) comM 1690782..1692266 (+) 1485 WP_011174141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TT_RS09085 (TT_C1786) - 1692263..1694275 (-) 2013 WP_011174142.1 molybdopterin oxidoreductase family protein -
  TT_RS09090 (TT_C1787) - 1694280..1695827 (-) 1548 WP_011174143.1 polyhydroxybutyrate depolymerase -
  TT_RS09095 (TT_C1788) - 1695850..1696461 (+) 612 WP_011174144.1 ribonuclease HII -
  TT_RS09100 (TT_C1789) - 1696501..1696980 (+) 480 WP_011174145.1 DUF4384 domain-containing protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52867.22 Da        Isoelectric Point: 8.4718

>NTDB_id=23280 TT_RS09080 WP_011174141.1 1690782..1692266(+) (comM) [Thermus thermophilus HB27]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=23280 TT_RS09080 WP_011174141.1 1690782..1692266(+) (comM) [Thermus thermophilus HB27]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGCGCGTCCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTCCCCGGGGCGGTGAACCTGGCCCTGGGGGCCCTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAACGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCTTTCCGCGCCCC
GCACCACACGGTGAGCTACGCTGGGCTCATCGGGGGTGGGGCCATTCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCAGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCCAACGGCCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.689

100

0.451
  comM Legionella pneumophila strain ERS1305867

44.689

100

0.451

Multiple sequence alignment