Detailed information NTG0023280

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VV1_RS13990
• Genome accession: NC_004459
• Coordinates: 3009913..3011262 (-)
• Length: 449 a.a.
• NCBI ID: WP_011080764.1
• Uniprot ID: A0A3Q0L6T7
• Organism: Vibrio vulnificus CMCP6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3004913..3016262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV1_RS13975 (VV1_2943)	bioB	3005981..3007033 (-)	1053	WP_011080761.1	biotin synthase BioB	-
VV1_RS13980 (VV1_2944)	bioA	3007174..3008451 (+)	1278	WP_039553314.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
VV1_RS13985 (VV1_2946)	serS	3008514..3009821 (-)	1308	WP_011080763.1	serine--tRNA ligase	-
VV1_RS13990 (VV1_2947)	rarA	3009913..3011262 (-)	1350	WP_011080764.1	replication-associated recombination protein A	Machinery gene
VV1_RS13995 (VV1_2949)	lolA	3011269..3011865 (-)	597	WP_011080765.1	outer membrane lipoprotein chaperone LolA	-
VV1_RS14000 (VV1_2950)	-	3011938..3014895 (-)	2958	WP_011080766.1	DNA translocase FtsK	-
VV1_RS14005 (VV1_2951)	lrp	3015040..3015534 (-)	495	WP_011080767.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49778.09 Da
• Isoelectric Point: 5.5143

>NTDB_id=23280 VV1_RS13990 WP_011080764.1 3009913..3011262(-) (rarA) [Vibrio vulnificus CMCP6]
MSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPFHLRNAPTGLMKDLGYGEGYRYAHDEPGAY
AAGEQYLPAEIDDRKYYQPTNRGLESKIAEKLDYLANLDANSPQKRYEK

Nucleotide

• Length: 1350 bp

>NTDB_id=23280 VV1_RS13990 WP_011080764.1 3009913..3011262(-) (rarA) [Vibrio vulnificus CMCP6]
GTGTCAAATTACACCTTAGATTTTTCAGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAACGATCGA
ACAGTACATCGGTCAGCAGCATATTTTAGGCCCTGGTAAGCCATTACGTCGCGCGCTAGAGGCCGGCCACATTCATTCAA
TGATTTTGTGGGGGCCTCCAGGTACAGGCAAGACAACATTAGCGGAAGTAGCCGCAAACTACGCCAACGCGGAAGTTGAA
CGCGTCTCTGCGGTCACGTCCGGCGTGAAAGAAATTCGTGCCGCAATTGAAAAAGCACGCGAGAACAAAATGGCGGGTCG
TCGCACCATCTTGTTTGTGGATGAGGTACATCGCTTTAATAAATCACAGCAAGATGCCTTCTTACCTCACATTGAAGATG
GAACAGTGACTTTTATCGGCGCGACCACAGAAAATCCATCGTTTGAACTGAACAACGCATTATTGTCACGTGCTCGTGTG
TATAAGCTTACGTCACTCAACAAAGAAGAAATCTCACTGGCATTAAACCAAGCGATCAACGACAAACAACGTGGTCTGGG
TAATACACCAGCACACTTTGCTGATAATGTCTTGGATCGTCTGGCTGAGCTCGTCAATGGTGATGCGCGAATGTCTCTTA
ACTATCTTGAGCTGCTGTATGACATGGCAGAAGACAATGCTCAGGGTGAAAAAGAGATCACGCTAAAGCTATTGGCGGAA
GTGGCGGGGGAGAAGGTCTCTCGTTTTGATAATAAAGGCGACATTTGGTACGACTTAATCTCTGCTGTGCACAAATCCAT
TCGCGGCTCAAACCCGGACGCTGCGCTTTATTGGTCGGCGAGAATGATCGCTGCCGGTTGTGATCCACTCTATATCGCGC
GACGTTTGCTGGCCATTGCCTCTGAAGATGTGGGCAATGCGGATCCGAGGGCAATGCAAGTGGCTCTTTCCGCGTGGGAT
TGCTTTACCCGTGTTGGGCCCGCAGAAGGCGAACGCGCAATTGCACAGGCGATCGTTTACCTTGCGTGCGCGCCGAAAAG
TAATGCGGTCTACACCGCTTGGAAGCAAGCGCTGTCGGATGCACATAATCTTCCTGAATTTGAAGTGCCTTTCCATTTGC
GTAATGCACCGACCGGATTGATGAAAGATCTTGGTTATGGGGAAGGTTATCGATACGCTCATGATGAACCAGGGGCCTAC
GCCGCGGGCGAACAATATTTGCCTGCTGAAATTGATGATCGCAAGTACTATCAGCCAACAAATCGAGGCTTAGAGAGCAA
AATCGCTGAAAAGTTAGATTACTTGGCTAATTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (54-159)

• AAA C-terminal domain (AAA_assoc_2) (189-268)

• MgsA AAA+ ATPase C terminal (MgsA_C) (269-435)

3D structure

• AlphaFold DB: A0A3Q0L6T7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.189	94.209	0.379