Detailed information NTG0023279

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TT_RS08710
• Genome accession: NC_005835
• Coordinates: 1633329..1634393 (+)
• Length: 354 a.a.
• NCBI ID: WP_011174079.1
• Uniprot ID: Q72GY2
• Organism: Thermus thermophilus HB27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1628329..1639393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TT_RS08690 (TT_C1712)	-	1628837..1629619 (+)	783	WP_011174075.1	TrmH family RNA methyltransferase	-
TT_RS08695 (TT_C1713)	groES	1629717..1630022 (+)	306	WP_011174076.1	co-chaperone GroES	-
TT_RS08700 (TT_C1714)	groL	1630035..1631666 (+)	1632	WP_011174077.1	chaperonin GroEL	-
TT_RS08705 (TT_C1715)	-	1631730..1633262 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
TT_RS08710 (TT_C1716)	pilD	1633329..1634393 (+)	1065	WP_011174079.1	prepilin peptidase	Machinery gene
TT_RS08715 (TT_C1717)	-	1634430..1634933 (+)	504	WP_011174080.1	DUF2939 domain-containing protein	-
TT_RS08720 (TT_C1718)	-	1634947..1635867 (+)	921	WP_011174081.1	nitroreductase family protein	-
TT_RS08725 (TT_C1719)	-	1635821..1636618 (-)	798	WP_011174082.1	C40 family peptidase	-
TT_RS08730 (TT_C1720)	-	1636619..1637377 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
TT_RS08735 (TT_C1721)	recF	1637362..1638393 (-)	1032	WP_011174084.1	DNA replication/repair protein RecF	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37885.22 Da
• Isoelectric Point: 8.1123

>NTDB_id=23279 TT_RS08710 WP_011174079.1 1633329..1634393(+) (pilD) [Thermus thermophilus HB27]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRPVVLPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLR
QRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1065 bp

>NTDB_id=23279 TT_RS08710 WP_011174079.1 1633329..1634393(+) (pilD) [Thermus thermophilus HB27]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGCCCGTGGTCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTGGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCCGCCGGGGGCCTGGCCCTCGCCGGGGGGCTCTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGAAGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTCTTGGGGGCCCTCG
GGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTCCTTAGG
CAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTGGGGGGC
GTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-317)

3D structure

• AlphaFold DB: Q72GY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.648	100	0.483