Detailed information NTG0232459

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S100027_RS09485
• Genome accession: NZ_CP021677
• Coordinates: 1838200..1838979 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SRCM100027
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1833200..1843979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S100027_RS09465 (S100027_01911)	trmFO	1833897..1835201 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
S100027_RS09470 (S100027_01912)	xerC	1835268..1836182 (+)	915	WP_003181750.1	tyrosine recombinase XerC	-
S100027_RS09475 (S100027_01913)	hslV	1836196..1836741 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
S100027_RS09480 (S100027_01914)	hslU	1836758..1838161 (+)	1404	WP_003181754.1	HslU--HslV peptidase ATPase subunit	-
S100027_RS09485 (S100027_01915)	codY	1838200..1838979 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S100027_RS09490 (S100027_01917)	flgB	1839333..1839722 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
S100027_RS09495 (S100027_01918)	flgC	1839722..1840174 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
S100027_RS09500 (S100027_01919)	fliE	1840188..1840505 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
S100027_RS09505 (S100027_01920)	fliF	1840556..1842157 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
S100027_RS09510 (S100027_01921)	fliG	1842171..1843187 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
S100027_RS09515 (S100027_01922)	fliH	1843171..1843938 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=232459 S100027_RS09485 WP_003181756.1 1838200..1838979(+) (codY) [Bacillus licheniformis strain SRCM100027]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=232459 S100027_RS09485 WP_003181756.1 1838200..1838979(+) (codY) [Bacillus licheniformis strain SRCM100027]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467