Detailed information NTG0232352

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S100141_RS05980
• Genome accession: NZ_CP021669
• Coordinates: 1111716..1112495 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SRCM100141
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1106716..1117495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S100141_RS05960 (S100141_01218)	trmFO	1107413..1108717 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
S100141_RS05965 (S100141_01219)	xerC	1108784..1109698 (+)	915	WP_003181750.1	tyrosine recombinase XerC	-
S100141_RS05970 (S100141_01220)	hslV	1109712..1110257 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
S100141_RS05975 (S100141_01221)	hslU	1110274..1111677 (+)	1404	WP_003181754.1	HslU--HslV peptidase ATPase subunit	-
S100141_RS05980 (S100141_01222)	codY	1111716..1112495 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S100141_RS05985 (S100141_01224)	flgB	1112849..1113238 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
S100141_RS05990 (S100141_01225)	flgC	1113238..1113690 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
S100141_RS05995 (S100141_01226)	fliE	1113704..1114021 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
S100141_RS06000 (S100141_01227)	fliF	1114072..1115673 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
S100141_RS06005 (S100141_01228)	fliG	1115687..1116703 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
S100141_RS06010 (S100141_01229)	fliH	1116687..1117454 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=232352 S100141_RS05980 WP_003181756.1 1111716..1112495(+) (codY) [Bacillus licheniformis strain SRCM100141]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=232352 S100141_RS05980 WP_003181756.1 1111716..1112495(+) (codY) [Bacillus licheniformis strain SRCM100141]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467