Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   S101267_RS14005 Genome accession   NZ_CP021505
Coordinates   2692065..2694422 (-) Length   785 a.a.
NCBI ID   WP_088030567.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2687065..2699422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS13985 (S101267_02806) - 2687148..2688701 (+) 1554 WP_013353028.1 SH3 domain-containing protein -
  S101267_RS13990 (S101267_02807) dtd 2688728..2689171 (-) 444 WP_013353029.1 D-aminoacyl-tRNA deacylase -
  S101267_RS13995 (S101267_02808) relA 2689184..2691388 (-) 2205 WP_013353030.1 GTP diphosphokinase -
  S101267_RS14000 (S101267_02809) - 2691547..2692059 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  S101267_RS14005 (S101267_02810) recJ 2692065..2694422 (-) 2358 WP_088030567.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  S101267_RS14010 (S101267_02811) - 2694478..2694804 (-) 327 WP_013353033.1 lipopolysaccharide assembly LapA domain-containing protein -
  S101267_RS14015 (S101267_02812) - 2694868..2695365 (-) 498 WP_013353034.1 cation:proton antiporter regulatory subunit -
  S101267_RS14020 (S101267_02813) secDF 2695496..2697715 (-) 2220 WP_013353035.1 protein translocase subunit SecDF -
  S101267_RS14025 (S101267_02814) - 2697752..2698048 (-) 297 WP_013353036.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87286.78 Da        Isoelectric Point: 5.0316

>NTDB_id=231411 S101267_RS14005 WP_088030567.1 2692065..2694422(-) (recJ) [Bacillus amyloliquefaciens strain SRCM101267]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYELKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAALDCVGFNKGELEAGIVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVPEWQLFDIRGKRMWEDTVTALPKEKRVLISFNEKTARKLRAELSGELAEITSESEAEALALDGKYAVFLDVPPSADRL
QRLLDGKKPERIYFVFINHEEHFLSSFPSRNDFKWFYAFLLKRGTFNLGKHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=231411 S101267_RS14005 WP_088030567.1 2692065..2694422(-) (recJ) [Bacillus amyloliquefaciens strain SRCM101267]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATGCTGACGGCGCTCAGACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTCATCATTACAGTGGATACGGGTATCGCCGCCGTTCATGAAGCCGAAGTCGCAAAAGAGCTC
GGTTTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCGCTGCATGATGAAAACAGATTAATA
GCGTCGCTTGGAATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGAGATAT
CGGACAAGCCGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCGGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCCGGCTGGAATCCGGGAGTTGTCGGTATTGTCGCATCGAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TTGTGCTGGGGATGGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTTAACCTTTTTACGAGC
CTGTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGACATCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCGGATTTAAGGGATCGGCTGAATCAAATGGCTGAAGAAACCCTTACCGAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATCACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTAAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAGGTGCGCCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATTCCGCCGCTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGATTGTTCCCGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCCGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGATGTGGGAAGATACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAAAAACCGCCCGAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAGATCACGT
CGGAATCCGAAGCAGAAGCTCTTGCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCATCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCTCATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTAACTTAGGCAAGCATGGTTCAG
AGCTTGCGAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.807

100

0.819

Multiple sequence alignment