Detailed information NTG0231391

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S101267_RS09015
• Genome accession: NZ_CP021505
• Coordinates: 1691856..1692635 (+)
• Length: 259 a.a.
• NCBI ID: WP_013352252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM101267
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1686856..1697635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101267_RS08995 (S101267_01801)	trmFO	1687543..1688850 (+)	1308	WP_013352248.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
S101267_RS09000 (S101267_01802)	xerC	1688920..1689837 (+)	918	WP_013352249.1	tyrosine recombinase XerC	-
S101267_RS09005 (S101267_01803)	hslV	1689853..1690398 (+)	546	WP_013352250.1	ATP-dependent protease subunit HslV	-
S101267_RS09010 (S101267_01804)	hslU	1690415..1691818 (+)	1404	WP_013352251.1	HslU--HslV peptidase ATPase subunit	-
S101267_RS09015 (S101267_01805)	codY	1691856..1692635 (+)	780	WP_013352252.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S101267_RS09020 (S101267_01806)	flgB	1692989..1693378 (+)	390	WP_013352253.1	flagellar basal body rod protein FlgB	-
S101267_RS09025 (S101267_01807)	flgC	1693378..1693830 (+)	453	WP_013352254.1	flagellar basal body rod protein FlgC	-
S101267_RS09030 (S101267_01808)	fliE	1693841..1694161 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
S101267_RS09035 (S101267_01809)	fliF	1694204..1695814 (+)	1611	WP_013352255.1	flagellar basal-body MS-ring/collar protein FliF	-
S101267_RS09040 (S101267_01810)	fliG	1695827..1696843 (+)	1017	WP_013352256.1	flagellar motor switch protein FliG	-
S101267_RS09045 (S101267_01811)	fliH	1696836..1697591 (+)	756	WP_013352257.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29028.23 Da
• Isoelectric Point: 4.6017

>NTDB_id=231391 S101267_RS09015 WP_013352252.1 1691856..1692635(+) (codY) [Bacillus amyloliquefaciens strain SRCM101267]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=231391 S101267_RS09015 WP_013352252.1 1691856..1692635(+) (codY) [Bacillus amyloliquefaciens strain SRCM101267]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.614	100	0.996
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467