Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   S101359_RS13580 Genome accession   NZ_CP021500
Coordinates   2740853..2743213 (-) Length   786 a.a.
NCBI ID   WP_088117661.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2735853..2748213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS13560 (S101359_02678) - 2735914..2737473 (+) 1560 WP_088117660.1 SH3 domain-containing protein -
  S101359_RS13565 (S101359_02679) dtd 2737506..2737949 (-) 444 WP_010789335.1 D-aminoacyl-tRNA deacylase -
  S101359_RS13570 (S101359_02680) relA 2737962..2740166 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  S101359_RS13575 (S101359_02681) - 2740335..2740847 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  S101359_RS13580 (S101359_02682) recJ 2740853..2743213 (-) 2361 WP_088117661.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  S101359_RS13585 (S101359_02683) - 2743281..2743619 (-) 339 WP_088117662.1 lipopolysaccharide assembly LapA domain-containing protein -
  S101359_RS13590 (S101359_02684) - 2743696..2744193 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  S101359_RS13595 (S101359_02685) secDF 2744391..2746613 (-) 2223 WP_088117663.1 protein translocase subunit SecDF -
  S101359_RS13600 (S101359_02686) - 2746652..2746948 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88164.79 Da        Isoelectric Point: 4.8391

>NTDB_id=231307 S101359_RS13580 WP_088117661.1 2740853..2743213(-) (recJ) [Bacillus atrophaeus strain SRCM101359]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMVYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNGSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLVALPSEKRVIVCFKEETKQLLQNEELRHQLYAVSSEQEARDLELDGAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=231307 S101359_RS13580 WP_088117661.1 2740853..2743213(-) (recJ) [Bacillus atrophaeus strain SRCM101359]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCAAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGGTATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCGTCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATTATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCATCCGAAGCA
GCCGGGATGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTGTCAGGCGGTGACAT
CGGACAAGCAAATGAAGAAACAATCGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGACGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAGATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATGGATCTGCCATCGT
AGTGGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAAGATTTTATTCCAGTTCAGGAAATTG
ATCTTGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATTTCTGAAATCAATCTCCTGTCCCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCACTTTTGGAAGACGTCCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAAGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CAAGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCCCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAGTGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGTTGCGCTTCCATCTGAAAA
ACGGGTCATTGTTTGTTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGTACGCGGTAA
GCTCGGAGCAGGAAGCGAGAGATCTTGAACTGGACGGCGCATATGTGGTTTTCCTTGATGCGCCGCCTTCATTAGATCTG
CTTTCAAGCTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTTGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAATTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ATCAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.478

100

0.845

Multiple sequence alignment