Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   S101359_RS08590 Genome accession   NZ_CP021500
Coordinates   1716390..1717169 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711390..1722169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS08570 (S101359_01693) trmFO 1712085..1713392 (+) 1308 WP_088117151.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  S101359_RS08575 (S101359_01694) xerC 1713459..1714373 (+) 915 WP_088117152.1 tyrosine recombinase XerC -
  S101359_RS08580 (S101359_01695) clpQ 1714387..1714932 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  S101359_RS08585 (S101359_01696) hslU 1714940..1716352 (+) 1413 WP_279626847.1 HslU--HslV peptidase ATPase subunit -
  S101359_RS08590 (S101359_01697) codY 1716390..1717169 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  S101359_RS08595 (S101359_01698) flgB 1717591..1717980 (+) 390 WP_088117154.1 flagellar basal body rod protein FlgB -
  S101359_RS08600 (S101359_01699) flgC 1717980..1718429 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  S101359_RS08605 (S101359_01700) fliE 1718440..1718760 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  S101359_RS08610 (S101359_01701) fliF 1718804..1720411 (+) 1608 WP_088117155.1 flagellar basal-body MS-ring/collar protein FliF -
  S101359_RS08615 (S101359_01702) fliG 1720424..1721440 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=231288 S101359_RS08590 WP_003328951.1 1716390..1717169(+) (codY) [Bacillus atrophaeus strain SRCM101359]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=231288 S101359_RS08590 WP_003328951.1 1716390..1717169(+) (codY) [Bacillus atrophaeus strain SRCM101359]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment