Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   S101359_RS08560 Genome accession   NZ_CP021500
Coordinates   1708846..1709745 (+) Length   299 a.a.
NCBI ID   WP_088117150.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1703846..1714745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS08540 (S101359_01687) - 1704496..1706244 (+) 1749 WP_088117149.1 hypothetical protein -
  S101359_RS08545 (S101359_01688) - 1706241..1706522 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  S101359_RS08550 (S101359_01689) sucC 1706696..1707853 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  S101359_RS08555 (S101359_01690) sucD 1707882..1708784 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  S101359_RS08560 (S101359_01691) dprA 1708846..1709745 (+) 900 WP_088117150.1 DNA-processing protein DprA Machinery gene
  S101359_RS08565 (S101359_01692) topA 1709934..1712009 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  S101359_RS08570 (S101359_01693) trmFO 1712085..1713392 (+) 1308 WP_088117151.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  S101359_RS08575 (S101359_01694) xerC 1713459..1714373 (+) 915 WP_088117152.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33203.26 Da        Isoelectric Point: 9.5634

>NTDB_id=231287 S101359_RS08560 WP_088117150.1 1708846..1709745(+) (dprA) [Bacillus atrophaeus strain SRCM101359]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=231287 S101359_RS08560 WP_088117150.1 1708846..1709745(+) (dprA) [Bacillus atrophaeus strain SRCM101359]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAATCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742

Multiple sequence alignment