Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BJE04_RS01415 Genome accession   NC_005139
Coordinates   237889..238599 (-) Length   236 a.a.
NCBI ID   WP_045596124.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232889..243599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS01385 (VV0222) gspL 233075..234274 (+) 1200 WP_011149211.1 type II secretion system protein GspL -
  BJE04_RS01390 (VV0223) - 234282..234773 (+) 492 WP_011078935.1 type II secretion system protein M -
  BJE04_RS01395 (VV0224) - 234775..235536 (+) 762 WP_011149212.1 type II secretion system protein N -
  BJE04_RS01400 (VV0225) cysQ 235662..236489 (-) 828 WP_011149213.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BJE04_RS01405 (VV0226) nudE 236504..237058 (-) 555 WP_011149214.1 ADP compounds hydrolase NudE -
  BJE04_RS01410 (VV0227) nfuA 237174..237758 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  BJE04_RS01415 comF 237889..238599 (-) 711 WP_045596124.1 amidophosphoribosyltransferase Machinery gene
  BJE04_RS01420 (VV0230) bioH 238688..239455 (+) 768 WP_043877025.1 pimeloyl-ACP methyl ester esterase BioH -
  BJE04_RS01425 (VV0233) - 239593..240063 (+) 471 WP_011078928.1 hypothetical protein -
  BJE04_RS01430 (VV0234) - 240147..242438 (-) 2292 WP_011149221.1 Tex family protein -
  BJE04_RS01435 (VV0235) greB 242674..243156 (+) 483 WP_011149222.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27235.03 Da        Isoelectric Point: 9.8519

>NTDB_id=23123 BJE04_RS01415 WP_045596124.1 237889..238599(-) (comF) [Vibrio vulnificus YJ016]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=23123 BJE04_RS01415 WP_045596124.1 237889..238599(-) (comF) [Vibrio vulnificus YJ016]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCACAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCCTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGATCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGTTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGGAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAACGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment