Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GBS_RS10220 Genome accession   NC_004368
Coordinates   2034907..2036175 (+) Length   422 a.a.
NCBI ID   WP_000774761.1    Uniprot ID   -
Organism   Streptococcus agalactiae NEM316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029907..2041175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS10185 (gbs1956) prmA 2030303..2031256 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  GBS_RS10190 - 2031253..2031717 (-) 465 WP_306341185.1 MepB family protein -
  GBS_RS10195 (gbs1958) - 2031835..2032551 (+) 717 WP_000859572.1 MerR family transcriptional regulator -
  GBS_RS10200 (gbs1959) - 2032590..2033060 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  GBS_RS10205 (gbs1960) - 2033032..2033490 (-) 459 WP_000350744.1 NUDIX hydrolase -
  GBS_RS10210 (gbs1962) - 2033626..2034096 (-) 471 WP_001051348.1 DUF3013 family protein -
  GBS_RS10215 (gbs1963) - 2034423..2034914 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  GBS_RS10220 (gbs1964) rarA 2034907..2036175 (+) 1269 WP_000774761.1 replication-associated recombination protein A Machinery gene
  GBS_RS10230 (gbs1965) - 2036718..2037023 (-) 306 WP_000511799.1 hypothetical protein -
  GBS_RS10235 (gbs1966) - 2037007..2037408 (-) 402 WP_000517013.1 hypothetical protein -
  GBS_RS11985 - 2037396..2038604 (-) 1209 WP_000622530.1 hypothetical protein -
  GBS_RS10245 (gbs1968) - 2038606..2038938 (-) 333 WP_000792763.1 hypothetical protein -
  GBS_RS11765 - 2039209..2039466 (-) 258 Protein_1962 hypothetical protein -
  GBS_RS10255 (gbs1972) - 2040355..2040849 (+) 495 WP_000141654.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46626.04 Da        Isoelectric Point: 6.5117

>NTDB_id=23105 GBS_RS10220 WP_000774761.1 2034907..2036175(+) (rarA) [Streptococcus agalactiae NEM316]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=23105 GBS_RS10220 WP_000774761.1 2034907..2036175(+) (rarA) [Streptococcus agalactiae NEM316]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588

Multiple sequence alignment