Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAGQ_RS01835 Genome accession   NZ_CP021495
Coordinates   339167..339604 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain GQJK49     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 334167..344604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAGQ_RS01800 (BAGQ_0375) - 335020..336222 (+) 1203 WP_032872800.1 GTP-binding protein -
  BAGQ_RS01805 (BAGQ_0376) - 336287..337423 (+) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  BAGQ_RS01810 (BAGQ_0377) - 337438..337872 (+) 435 WP_021494203.1 RDD family protein -
  BAGQ_RS01815 (BAGQ_0378) - 337945..338268 (+) 324 WP_032872805.1 YckD family protein -
  BAGQ_RS20220 - 338372..338563 (+) 192 WP_074534339.1 family 1 glycosylhydrolase -
  BAGQ_RS01825 (BAGQ_0379) - 338488..338706 (+) 219 Protein_317 family 1 glycosylhydrolase -
  BAGQ_RS01830 comJ 338747..339146 (-) 400 Protein_318 competence protein ComJ -
  BAGQ_RS01835 (BAGQ_0382) nucA/comI 339167..339604 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAGQ_RS01840 (BAGQ_0383) hxlB 339961..340518 (-) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  BAGQ_RS01845 (BAGQ_0384) hxlA 340515..341150 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BAGQ_RS01850 (BAGQ_0385) - 341382..341744 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=231024 BAGQ_RS01835 WP_003156588.1 339167..339604(-) (nucA/comI) [Bacillus velezensis strain GQJK49]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=231024 BAGQ_RS01835 WP_003156588.1 339167..339604(-) (nucA/comI) [Bacillus velezensis strain GQJK49]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment