Detailed information
Bioinformatically predicted
Overview
| Name | rcrQ | Type | Regulator |
| Locus tag | NRBB56_RS10225 | Genome accession | NZ_CP021394 |
| Coordinates | 2274233..2276062 (-) | Length | 609 a.a. |
| NCBI ID | WP_106630694.1 | Uniprot ID | - |
| Organism | Bifidobacterium breve strain NRBB56 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2233104..2301977 | 2274233..2276062 | within | 0 |
Gene organization within MGE regions
Location: 2233104..2301977
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRBB56_RS10050 (NRBB56_1894) | - | 2233104..2234072 (-) | 969 | WP_106630685.1 | glycosyltransferase family 2 protein | - |
| NRBB56_RS10055 (NRBB56_1895) | - | 2234610..2235866 (-) | 1257 | WP_106630686.1 | polysaccharide ABC transporter ATP-binding protein | - |
| NRBB56_RS10060 (NRBB56_1896) | - | 2235870..2236706 (-) | 837 | WP_106630776.1 | ABC transporter permease | - |
| NRBB56_RS10065 (NRBB56_1897) | rfbB | 2236917..2237939 (+) | 1023 | WP_019727415.1 | dTDP-glucose 4,6-dehydratase | - |
| NRBB56_RS10070 (NRBB56_1898) | - | 2237996..2239426 (+) | 1431 | WP_019727416.1 | sugar nucleotide-binding protein | - |
| NRBB56_RS10075 (NRBB56_1899) | rfbA | 2239423..2240328 (+) | 906 | WP_013389370.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| NRBB56_RS10080 (NRBB56_1900) | - | 2240398..2242218 (-) | 1821 | WP_025301482.1 | glycoside hydrolase family 25 protein | - |
| NRBB56_RS10085 (NRBB56_1901) | istA | 2242812..2244311 (+) | 1500 | WP_015439061.1 | IS21 family transposase | - |
| NRBB56_RS10090 (NRBB56_1902) | istB | 2244308..2245087 (+) | 780 | WP_015439062.1 | IS21-like element helper ATPase IstB | - |
| NRBB56_RS10095 (NRBB56_1904) | - | 2245603..2246163 (+) | 561 | WP_025341803.1 | helix-turn-helix domain-containing protein | - |
| NRBB56_RS10100 (NRBB56_1905) | - | 2246115..2246969 (+) | 855 | WP_106630777.1 | IS3 family transposase | - |
| NRBB56_RS10105 (NRBB56_1906) | - | 2247121..2248524 (-) | 1404 | WP_021650016.1 | LCP family protein | - |
| NRBB56_RS10110 (NRBB56_1907) | - | 2248935..2250395 (+) | 1461 | WP_106630687.1 | ABC transporter permease | - |
| NRBB56_RS11135 (NRBB56_1908) | - | 2250392..2251576 (+) | 1185 | WP_198554083.1 | ATP-binding cassette domain-containing protein | - |
| NRBB56_RS10125 (NRBB56_1909) | - | 2251937..2252701 (+) | 765 | WP_106630689.1 | HD domain-containing protein | - |
| NRBB56_RS10130 (NRBB56_1910) | - | 2252819..2253679 (-) | 861 | WP_025341947.1 | class II glutamine amidotransferase | - |
| NRBB56_RS10135 (NRBB56_1911) | - | 2253950..2256373 (-) | 2424 | WP_106630690.1 | KUP/HAK/KT family potassium transporter | - |
| NRBB56_RS10140 (NRBB56_1912) | - | 2256572..2257531 (-) | 960 | WP_106630691.1 | TatD family hydrolase | - |
| NRBB56_RS10145 (NRBB56_1913) | - | 2257728..2259533 (-) | 1806 | WP_003832351.1 | ABC transporter ATP-binding protein | - |
| NRBB56_RS10150 (NRBB56_1914) | - | 2259733..2261643 (-) | 1911 | WP_025263323.1 | ABC transporter ATP-binding protein | - |
| NRBB56_RS10155 | - | 2262064..2262234 (+) | 171 | WP_025263324.1 | hypothetical protein | - |
| NRBB56_RS10160 (NRBB56_1915) | - | 2262351..2263667 (-) | 1317 | WP_025263325.1 | ATP-binding protein | - |
| NRBB56_RS10165 (NRBB56_1916) | - | 2264020..2264268 (-) | 249 | Protein_1924 | family 43 glycosylhydrolase | - |
| NRBB56_RS10175 (NRBB56_1917) | - | 2264688..2265497 (-) | 810 | Protein_1925 | ABC transporter substrate-binding protein | - |
| NRBB56_RS10180 (NRBB56_1918) | - | 2265484..2265966 (+) | 483 | Protein_1926 | C1 family peptidase | - |
| NRBB56_RS10185 | - | 2266047..2266340 (-) | 294 | WP_016462700.1 | hypothetical protein | - |
| NRBB56_RS10190 (NRBB56_1920) | metG | 2266850..2268715 (-) | 1866 | WP_025263331.1 | methionine--tRNA ligase | - |
| NRBB56_RS10195 (NRBB56_1921) | - | 2268992..2269624 (+) | 633 | WP_014484400.1 | hypothetical protein | - |
| NRBB56_RS11425 | - | 2269804..2269962 (+) | 159 | WP_003829623.1 | hypothetical protein | - |
| NRBB56_RS10205 (NRBB56_1922) | rsmI | 2270082..2271101 (-) | 1020 | WP_074525213.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| NRBB56_RS10215 (NRBB56_1923) | - | 2271760..2273178 (-) | 1419 | WP_106630692.1 | MFS transporter | - |
| NRBB56_RS10220 (NRBB56_1924) | - | 2273283..2274224 (+) | 942 | WP_106630693.1 | FAD:protein FMN transferase | - |
| NRBB56_RS10225 (NRBB56_1925) | rcrQ | 2274233..2276062 (-) | 1830 | WP_106630694.1 | ABC transporter ATP-binding protein | Regulator |
| NRBB56_RS10230 | - | 2276194..2278062 (-) | 1869 | Protein_1935 | ABC transporter ATP-binding protein | - |
| NRBB56_RS10240 (NRBB56_1928) | - | 2278246..2278767 (-) | 522 | WP_106630695.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| NRBB56_RS10245 (NRBB56_1929) | - | 2279373..2279957 (-) | 585 | WP_021650037.1 | LPXTG-motif protein cell wall anchor domain protein | - |
| NRBB56_RS10950 (NRBB56_1930) | - | 2279998..2280435 (-) | 438 | WP_021650038.1 | hypothetical protein | - |
| NRBB56_RS11430 (NRBB56_1931) | - | 2280425..2280985 (+) | 561 | WP_021650039.1 | transposase family protein | - |
| NRBB56_RS11435 | - | 2281132..2281680 (+) | 549 | Protein_1940 | ISL3 family transposase | - |
| NRBB56_RS10270 (NRBB56_1934) | - | 2281968..2282534 (-) | 567 | WP_015439314.1 | sugar O-acetyltransferase | - |
| NRBB56_RS10275 (NRBB56_1936) | - | 2282626..2283699 (-) | 1074 | WP_015439315.1 | LacI family DNA-binding transcriptional regulator | - |
| NRBB56_RS10280 (NRBB56_1937) | - | 2283822..2284601 (-) | 780 | WP_015439316.1 | hypothetical protein | - |
| NRBB56_RS10285 (NRBB56_1938) | - | 2284668..2286764 (-) | 2097 | WP_032743212.1 | beta-galactosidase | - |
| NRBB56_RS10290 (NRBB56_1939) | - | 2286826..2287767 (-) | 942 | WP_015439318.1 | ABC transporter permease | - |
| NRBB56_RS10295 (NRBB56_1940) | - | 2287772..2289331 (-) | 1560 | WP_032743213.1 | sugar ABC transporter ATP-binding protein | - |
| NRBB56_RS10300 (NRBB56_1941) | - | 2289356..2290501 (-) | 1146 | WP_197736763.1 | substrate-binding domain-containing protein | - |
| NRBB56_RS10305 (NRBB56_1942) | - | 2290860..2291426 (-) | 567 | WP_232782499.1 | transposase | - |
| NRBB56_RS10310 (NRBB56_1943) | istB | 2291525..2292304 (-) | 780 | WP_015439062.1 | IS21-like element helper ATPase IstB | - |
| NRBB56_RS10315 (NRBB56_1944) | istA | 2292301..2293800 (-) | 1500 | WP_015439061.1 | IS21 family transposase | - |
| NRBB56_RS10320 (NRBB56_1945) | - | 2293997..2294452 (-) | 456 | WP_232782500.1 | hypothetical protein | - |
| NRBB56_RS11440 | - | 2294520..2294684 (-) | 165 | WP_196489835.1 | hypothetical protein | - |
| NRBB56_RS11760 (NRBB56_1946) | - | 2294866..2295006 (-) | 141 | WP_371733863.1 | hypothetical protein | - |
| NRBB56_RS10340 (NRBB56_1947) | - | 2295224..2295658 (-) | 435 | WP_041473463.1 | IS5/IS1182 family transposase | - |
| NRBB56_RS10345 (NRBB56_1948) | - | 2295731..2297254 (-) | 1524 | WP_106630700.1 | amino acid permease | - |
| NRBB56_RS10350 (NRBB56_1949) | - | 2297508..2301266 (-) | 3759 | WP_106630701.1 | ABC transporter permease | - |
| NRBB56_RS10355 (NRBB56_1950) | - | 2301276..2301977 (-) | 702 | WP_003829607.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 609 a.a. Molecular weight: 66522.86 Da Isoelectric Point: 5.9488
>NTDB_id=230413 NRBB56_RS10225 WP_106630694.1 2274233..2276062(-) (rcrQ) [Bifidobacterium breve strain NRBB56]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMAIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMAIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
Nucleotide
Download Length: 1830 bp
>NTDB_id=230413 NRBB56_RS10225 WP_106630694.1 2274233..2276062(-) (rcrQ) [Bifidobacterium breve strain NRBB56]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGTATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGCCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCAGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ATGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCGCCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGTATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGCCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCAGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ATGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCGCCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrQ | Streptococcus mutans UA159 |
53.504 |
96.059 |
0.514 |