Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NRBB52_RS10205 Genome accession   NZ_CP021393
Coordinates   2251225..2253093 (-) Length   622 a.a.
NCBI ID   WP_080868203.1    Uniprot ID   -
Organism   Bifidobacterium breve strain NRBB52     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2246225..2258093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRBB52_RS10190 (NRBB52_1930) - 2246791..2248209 (-) 1419 WP_106641179.1 MFS transporter -
  NRBB52_RS10195 (NRBB52_1931) - 2248314..2249255 (+) 942 WP_025332521.1 FAD:protein FMN transferase -
  NRBB52_RS10200 (NRBB52_1932) rcrQ 2249264..2251093 (-) 1830 WP_080868204.1 ABC transporter ATP-binding protein Regulator
  NRBB52_RS10205 (NRBB52_1933) rcrP 2251225..2253093 (-) 1869 WP_080868203.1 ABC transporter ATP-binding protein Regulator
  NRBB52_RS10215 (NRBB52_1934) - 2253277..2253798 (-) 522 WP_003829614.1 MarR family winged helix-turn-helix transcriptional regulator -
  NRBB52_RS10220 - 2254424..2254648 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -
  NRBB52_RS10225 (NRBB52_1935) - 2254736..2256259 (-) 1524 WP_025263336.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68136.81 Da        Isoelectric Point: 5.3281

>NTDB_id=230407 NRBB52_RS10205 WP_080868203.1 2251225..2253093(-) (rcrP) [Bifidobacterium breve strain NRBB52]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQRQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAK
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=230407 NRBB52_RS10205 WP_080868203.1 2251225..2253093(-) (rcrP) [Bifidobacterium breve strain NRBB52]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTTCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTGATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCTCGTGCCGACGTGTCCGCGCAGCGTGTGATGGAAGTGCTCAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCCAAGACCGGTCAGACCGGCACCGTGGAATTCAAGAACGT
GAGCTTTACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAATATCAGCTATGGCGACAAGCCCGGCGAGAACGACGCGGTCGAACTCGCGGATA
CCTCTACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAGACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCAAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGACAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.259

100

0.49

Multiple sequence alignment