Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NRBB57_RS11010 Genome accession   NZ_CP021389
Coordinates   2392090..2393919 (-) Length   609 a.a.
NCBI ID   WP_032738281.1    Uniprot ID   -
Organism   Bifidobacterium breve strain NRBB57     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387090..2398919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRBB57_RS12165 - 2387660..2387818 (+) 159 WP_003829623.1 hypothetical protein -
  NRBB57_RS10990 (NRBB57_2110) rsmI 2387938..2388957 (-) 1020 WP_074525213.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NRBB57_RS11000 (NRBB57_2111) - 2389617..2391035 (-) 1419 WP_106621146.1 MFS transporter -
  NRBB57_RS11005 (NRBB57_2112) - 2391140..2392081 (+) 942 WP_016462703.1 FAD:protein FMN transferase -
  NRBB57_RS11010 (NRBB57_2113) rcrQ 2392090..2393919 (-) 1830 WP_032738281.1 ABC transporter ATP-binding protein Regulator
  NRBB57_RS11015 (NRBB57_2114) rcrP 2394051..2395919 (-) 1869 WP_025341951.1 ABC transporter ATP-binding protein Regulator
  NRBB57_RS11025 (NRBB57_2115) - 2396103..2396624 (-) 522 WP_003829614.1 MarR family winged helix-turn-helix transcriptional regulator -
  NRBB57_RS11030 - 2397250..2397462 (+) 213 WP_230454659.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66637.01 Da        Isoelectric Point: 5.7893

>NTDB_id=230382 NRBB57_RS11010 WP_032738281.1 2392090..2393919(-) (rcrQ) [Bifidobacterium breve strain NRBB57]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQVLLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNDTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=230382 NRBB57_RS11010 WP_032738281.1 2392090..2393919(-) (rcrQ) [Bifidobacterium breve strain NRBB57]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCACGGCAAGCCGGTGCTCAACTCG
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
AAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCACAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGCATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCGGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGTGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTACTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGACACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGATTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.504

96.059

0.514

Multiple sequence alignment