Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NRBB11_RS09895 Genome accession   NZ_CP021388
Coordinates   2249186..2251015 (-) Length   609 a.a.
NCBI ID   WP_042994364.1    Uniprot ID   -
Organism   Bifidobacterium breve strain NRBB11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244186..2256015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRBB11_RS10895 - 2244756..2244914 (+) 159 WP_003829623.1 hypothetical protein -
  NRBB11_RS09875 (NRBB11_1873) rsmI 2245034..2246053 (-) 1020 WP_198553962.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NRBB11_RS09885 (NRBB11_1874) - 2246713..2248131 (-) 1419 WP_106628941.1 MFS transporter -
  NRBB11_RS09890 (NRBB11_1875) - 2248236..2249177 (+) 942 WP_106628942.1 FAD:protein FMN transferase -
  NRBB11_RS09895 (NRBB11_1876) rcrQ 2249186..2251015 (-) 1830 WP_042994364.1 ABC transporter ATP-binding protein Regulator
  NRBB11_RS09900 (NRBB11_1877) rcrP 2251147..2253015 (-) 1869 WP_052788289.1 ABC transporter ATP-binding protein Regulator
  NRBB11_RS09910 (NRBB11_1878) - 2253199..2253720 (-) 522 WP_019727591.1 MarR family winged helix-turn-helix transcriptional regulator -
  NRBB11_RS09915 - 2254346..2254558 (+) 213 WP_230454659.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66654.00 Da        Isoelectric Point: 5.7914

>NTDB_id=230375 NRBB11_RS09895 WP_042994364.1 2249186..2251015(-) (rcrQ) [Bifidobacterium breve strain NRBB11]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYDNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDERIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALSD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=230375 NRBB11_RS09895 WP_042994364.1 2249186..2251015(-) (rcrQ) [Bifidobacterium breve strain NRBB11]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCACGGCAAGCCGGTGCTCAACTCG
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
AAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCACAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGCTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGTATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACGACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAAGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCAGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTT
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGATGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCGGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTGCAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTTGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCGGATTTGTACAACAGCCAGTTCGCTTTGTCGGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.504

96.059

0.514

Multiple sequence alignment