Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CA919_RS05110 Genome accession   NZ_CP021286
Coordinates   1093735..1094283 (+) Length   182 a.a.
NCBI ID   WP_011213354.1    Uniprot ID   A0A128KQU2
Organism   Legionella pneumophila subsp. pneumophila strain Albuquerque     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088735..1099283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA919_RS05100 - 1091243..1092250 (-) 1008 WP_011213352.1 hypothetical protein -
  CA919_RS05105 pilM 1092667..1093731 (+) 1065 WP_011213353.1 type IV pilus assembly protein PilM Machinery gene
  CA919_RS05110 pilN 1093735..1094283 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  CA919_RS05115 - 1094297..1094895 (+) 599 Protein_981 type 4a pilus biogenesis protein PilO -
  CA919_RS05120 pilP 1094892..1095476 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  CA919_RS05125 pilQ 1095480..1097576 (+) 2097 WP_011213357.1 type IV pilus secretin PilQ Machinery gene
  CA919_RS05130 aroK 1098022..1098549 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21236.95 Da        Isoelectric Point: 10.1404

>NTDB_id=229703 CA919_RS05110 WP_011213354.1 1093735..1094283(+) (pilN) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQTNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=229703 CA919_RS05110 WP_011213354.1 1093735..1094283(+) (pilN) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCGGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAACGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTGGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAGTTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTGGTAACACTTTGGGGGTATTCCGAATCTA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCCAATGTCTGGATACAGAATCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A128KQU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment