Detailed information NTG0022936

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SAG_RS13285
• Genome accession: NC_004116
• Coordinates: 2137436..2138545 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae 2603V/R
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2132436..2143545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAG_RS13260 (SAG2151)	-	2132808..2133647 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
SAG_RS13265 (SAG2152)	pgsA	2133647..2134189 (-)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SAG_RS13270 (SAG2153)	yfmH	2134312..2135595 (-)	1284	WP_000217754.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SAG_RS13275 (SAG2154)	yfmF	2135597..2136841 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SAG_RS13280 (SAG2155)	yaaA	2137080..2137433 (+)	354	WP_000384871.1	S4 domain-containing protein YaaA	-
SAG_RS13285 (SAG2156)	recF	2137436..2138545 (+)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
SAG_RS13290 (SAG2157)	-	2138557..2139423 (-)	867	WP_000398683.1	GRP family sugar transporter	-
SAG_RS13295 (SAG2158)	-	2139479..2140141 (-)	663	WP_001865840.1	helix-turn-helix domain-containing protein	-
SAG_RS13300 (SAG2159)	guaB	2140216..2141697 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
SAG_RS13305 (SAG2160)	-	2141854..2142339 (-)	486	WP_001034427.1	arginine repressor	-
SAG_RS13310 (SAG2161)	-	2142349..2143029 (-)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=22936 SAG_RS13285 WP_000264863.1 2137436..2138545(+) (recF) [Streptococcus agalactiae 2603V/R]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=22936 SAG_RS13285 WP_000264863.1 2137436..2138545(+) (recF) [Streptococcus agalactiae 2603V/R]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444