Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B9N48_RS08470 Genome accession   NZ_CP021169
Coordinates   1608508..1609287 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain TLO3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603508..1614287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS08450 trmFO 1604201..1605508 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B9N48_RS08455 xerC 1605576..1606490 (+) 915 WP_086343835.1 tyrosine recombinase XerC -
  B9N48_RS08460 clpQ 1606503..1607048 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  B9N48_RS08465 hslU 1607056..1608468 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  B9N48_RS08470 codY 1608508..1609287 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B9N48_RS08475 flgB 1609667..1610056 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  B9N48_RS08480 flgC 1610056..1610508 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  B9N48_RS08485 fliE 1610519..1610839 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  B9N48_RS08490 fliF 1610885..1612495 (+) 1611 WP_052476550.1 flagellar basal-body MS-ring/collar protein FliF -
  B9N48_RS08495 fliG 1612508..1613524 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  B9N48_RS08500 fliH 1613517..1614269 (+) 753 WP_024572494.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=228764 B9N48_RS08470 WP_003220850.1 1608508..1609287(+) (codY) [Bacillus subtilis strain TLO3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=228764 B9N48_RS08470 WP_003220850.1 1608508..1609287(+) (codY) [Bacillus subtilis strain TLO3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCGGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment