Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CAY59_RS16565 Genome accession   NZ_CP021145
Coordinates   3495183..3495908 (+) Length   241 a.a.
NCBI ID   WP_077262007.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3490183..3500908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS16550 (CAY59_16355) - 3491308..3493629 (+) 2322 WP_086369793.1 Tex family protein -
  CAY59_RS16555 (CAY59_16360) - 3493734..3494198 (-) 465 WP_045420075.1 hypothetical protein -
  CAY59_RS16560 (CAY59_16365) bioH 3494334..3495098 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  CAY59_RS16565 (CAY59_16370) comF 3495183..3495908 (+) 726 WP_077262007.1 ComF family protein Machinery gene
  CAY59_RS16570 (CAY59_16375) nfuA 3496006..3496590 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  CAY59_RS16575 (CAY59_16380) nudE 3496766..3497332 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  CAY59_RS16580 (CAY59_16385) cysQ 3497380..3498207 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CAY59_RS16585 (CAY59_16390) - 3498498..3499259 (-) 762 WP_010650510.1 type II secretion system protein N -
  CAY59_RS16590 (CAY59_16395) - 3499261..3499752 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27676.79 Da        Isoelectric Point: 7.9917

>NTDB_id=228584 CAY59_RS16565 WP_077262007.1 3495183..3495908(+) (comF) [Vibrio campbellii strain LA16-V1]
MLSHQWQNIMHRVLSSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=228584 CAY59_RS16565 WP_077262007.1 3495183..3495908(+) (comF) [Vibrio campbellii strain LA16-V1]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

98.34

100

0.983
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment