Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C4J65_RS06685 Genome accession   NZ_CP026730
Coordinates   1421769..1423907 (-) Length   712 a.a.
NCBI ID   WP_115741561.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1416769..1428907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS06670 (C4J65_06660) - 1417684..1418685 (-) 1002 WP_115741558.1 TerC family protein -
  C4J65_RS06675 (C4J65_06665) - 1418938..1420953 (-) 2016 WP_115741559.1 TerD family protein -
  C4J65_RS06680 (C4J65_06670) - 1421049..1421627 (-) 579 WP_115741560.1 TerD family protein -
  C4J65_RS06685 (C4J65_06675) uvrB 1421769..1423907 (-) 2139 WP_115741561.1 excinuclease ABC subunit UvrB Machinery gene
  C4J65_RS06690 (C4J65_06680) - 1423948..1424826 (-) 879 WP_115741562.1 MHYT domain-containing protein -
  C4J65_RS06695 (C4J65_06685) - 1425118..1425987 (+) 870 WP_115741563.1 glycerophosphodiester phosphodiesterase family protein -
  C4J65_RS06700 (C4J65_06690) - 1426025..1426579 (+) 555 WP_115741564.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C4J65_RS06705 (C4J65_06695) - 1426604..1427047 (-) 444 WP_115741565.1 VOC family protein -
  C4J65_RS06710 (C4J65_06700) - 1427179..1428084 (+) 906 WP_115741566.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79994.50 Da        Isoelectric Point: 4.7946

>NTDB_id=228380 C4J65_RS06685 WP_115741561.1 1421769..1423907(-) (uvrB) [Streptomyces sp. CB09001]
MRPVSQIERTVAPFEVVSPYQPSGDQPTAIAELDRRVQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDVAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELVERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGAYELSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRQLKEGKGAKAPVPALGG
QAAGGTKAARGRAKETAVTDRPAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMREAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=228380 C4J65_RS06685 WP_115741561.1 1421769..1423907(-) (uvrB) [Streptomyces sp. CB09001]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTACCAGCCGAGCGGCGACCAGCC
CACGGCCATCGCCGAGCTGGACCGGCGCGTCCAGGCGGGCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGAA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCCACCAACTCGCTGCTCACCCGCCGTGACGTCATCGTGGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCGCTGCGGGTCGGGGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCGCCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTCGCCGGGCCCGAGCGCCTGGAGCGGGC
GGTCAACGACATCGAGAAGGAGCTGGTCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGTGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCACCCGGCTCCCCGCCGAACACGCTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCGTCGGTCAGACCGTCTATCTG
TCGGCGACCCCGGGGGCCTACGAGCTCTCCCGTTCGGACGGCGCCGTGGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCCGGCGTACCGAGAAGGACG
AACGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCGTCGAGCTCGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACGCTGCGCCGGGTCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTCATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTTCACATGTAC
GCGGACAAGATCACGCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCGTTCAACAA
GGCGAACGGCGTCGATCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTGGCGCAGATCGCCCGCGAGGACGTCGACA
CCGAACAGCTCCTCGGCTCGGGCTACCGCCAGCTGAAGGAGGGCAAGGGCGCCAAGGCTCCCGTGCCCGCGCTGGGCGGT
CAGGCGGCGGGCGGAACCAAGGCAGCCAGGGGCAGGGCCAAGGAGACGGCGGTGACCGACCGTCCCGCGGCGGAGCTGGC
CGAGCAGATCGAGGACCTCACCACCCGGATGCGGGCGGCCGCGGCCGACCTCCAGTTCGAGATCGCGGCCCGGCTGCGCG
ACGAGGTCTCCGAAATGAAGAAGGAACTGCGCCAGATGCGGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(668-701)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.184

96.77

0.553
  uvrB Streptococcus pneumoniae R6

57.184

96.77

0.553
  uvrB Streptococcus pneumoniae D39

57.184

96.77

0.553

Multiple sequence alignment