Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DFI_RS13690 Genome accession   NZ_CP021081
Coordinates   2800705..2801799 (+) Length   364 a.a.
NCBI ID   WP_027464169.1    Uniprot ID   -
Organism   Deinococcus ficus strain CC-FR2-10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2795705..2806799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFI_RS13665 (DFI_13675) - 2795843..2796076 (+) 234 WP_027464174.1 hypothetical protein -
  DFI_RS13670 (DFI_13680) - 2796135..2797628 (+) 1494 WP_027464173.1 dihydrolipoamide acetyltransferase family protein -
  DFI_RS13675 (DFI_13685) - 2797892..2798341 (+) 450 WP_027464172.1 hypothetical protein -
  DFI_RS13680 (DFI_13690) - 2798564..2799223 (+) 660 WP_027464171.1 response regulator transcription factor -
  DFI_RS13685 (DFI_13695) - 2799344..2800708 (+) 1365 WP_027464170.1 sensor histidine kinase -
  DFI_RS13690 (DFI_13700) dprA 2800705..2801799 (+) 1095 WP_027464169.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 37927.49 Da        Isoelectric Point: 7.1592

>NTDB_id=228171 DFI_RS13690 WP_027464169.1 2800705..2801799(+) (dprA) [Deinococcus ficus strain CC-FR2-10]
MTGAPPHPHAAQAAELIALLTLRFTPHLGPRRIEALRTHFGTAQAALNAPLAELRTVPALDSRSVAGIGTAKAADLAHQE
LQKAEREGVTLLGRGLPGYPPALDALGDPPPVVWVRGSLPELPVTPRSIGIVGTRTASPHAISLTRGIAADLARADVTVI
SGLARGVDTAAHEAAVDAGGTSIGVLGSAVNHIYPSENVPLARRLTVLSEYPLGTPPAQHHFPMRNRLIAALSSGTLVVE
GERKSGSLITATHALECGRTVFAVPGRAGDPRASGPHKLLREGAVLTETAQDILDELNWGTAPAQPLPDLPPEQARVLKA
LGTPATLDDLQAVTGLALPDLQTALVMLHLMGLAEETGGRWVRR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=228171 DFI_RS13690 WP_027464169.1 2800705..2801799(+) (dprA) [Deinococcus ficus strain CC-FR2-10]
GTGACCGGCGCCCCACCTCACCCTCACGCTGCCCAGGCCGCCGAACTCATCGCCCTGCTCACCCTGCGCTTCACGCCGCA
CCTGGGGCCGCGCCGCATTGAGGCGCTGCGCACACACTTCGGGACTGCCCAGGCGGCCCTGAACGCTCCGCTGGCCGAAC
TGCGCACCGTGCCCGCCCTCGACAGTCGCAGCGTGGCGGGCATCGGCACTGCGAAGGCCGCCGACCTCGCGCACCAGGAA
CTCCAGAAGGCCGAGCGCGAAGGCGTCACCCTGCTCGGCCGGGGCCTGCCCGGGTACCCGCCGGCCCTTGACGCCCTGGG
TGACCCTCCACCCGTCGTGTGGGTGCGCGGGTCCCTCCCTGAGCTGCCCGTCACGCCGCGCAGCATCGGGATCGTGGGGA
CCCGCACCGCCAGCCCACACGCGATCAGCCTGACCCGCGGTATCGCCGCCGATCTCGCCCGCGCGGACGTGACCGTCATC
AGCGGACTGGCGCGCGGCGTGGATACCGCCGCGCACGAGGCGGCGGTGGACGCCGGCGGGACCAGCATCGGTGTGCTCGG
CAGCGCCGTGAACCACATCTACCCCAGCGAGAACGTGCCTCTGGCCCGCCGCCTCACCGTGCTCAGCGAATATCCGCTGG
GCACCCCGCCGGCGCAGCATCACTTCCCCATGCGCAACCGCCTGATCGCCGCCCTGAGCAGCGGTACCCTGGTCGTGGAG
GGCGAACGGAAATCCGGATCGCTGATCACCGCCACGCACGCCCTGGAATGCGGCCGGACCGTGTTTGCGGTGCCGGGCCG
CGCCGGCGACCCCCGGGCCAGCGGTCCGCACAAACTCCTCCGGGAGGGCGCGGTCCTGACGGAAACCGCCCAGGACATCC
TGGATGAGCTGAACTGGGGCACTGCACCGGCCCAGCCCCTCCCTGACCTCCCGCCAGAGCAGGCGCGGGTGCTGAAGGCG
CTGGGCACGCCGGCCACCCTGGACGACCTTCAGGCGGTGACCGGTCTGGCGCTCCCCGACCTGCAGACCGCACTGGTGAT
GCTGCACCTGATGGGCCTTGCGGAAGAGACCGGCGGTCGCTGGGTGAGAAGGTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(302-359)

DNA recombination-mediator protein A (DNA_processg_A)

(85-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

72.365

96.429

0.698

Multiple sequence alignment