Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | DFI_RS03185 | Genome accession | NZ_CP021081 |
| Coordinates | 631916..632515 (-) | Length | 199 a.a. |
| NCBI ID | WP_022800127.1 | Uniprot ID | A0A221SU53 |
| Organism | Deinococcus ficus strain CC-FR2-10 | ||
| Function | promote later steps in plasmid transformation (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 626916..637515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DFI_RS03170 (DFI_03170) | - | 627338..628459 (-) | 1122 | WP_027461912.1 | hypothetical protein | - |
| DFI_RS03175 (DFI_03175) | - | 628592..628855 (+) | 264 | WP_027461913.1 | hypothetical protein | - |
| DFI_RS03180 (DFI_03180) | - | 628901..631864 (+) | 2964 | WP_051307442.1 | GAF domain-containing protein | - |
| DFI_RS03185 (DFI_03185) | recR | 631916..632515 (-) | 600 | WP_022800127.1 | recombination mediator RecR | Machinery gene |
| DFI_RS03190 (DFI_03190) | - | 632544..632834 (-) | 291 | WP_027461915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DFI_RS03195 (DFI_03195) | - | 632891..635359 (-) | 2469 | WP_081425691.1 | transglycosylase domain-containing protein | - |
| DFI_RS03200 (DFI_03200) | ttcA | 635480..636361 (+) | 882 | WP_027461916.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DFI_RS03205 (DFI_03205) | - | 636516..637037 (+) | 522 | WP_022800123.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 21843.05 Da Isoelectric Point: 6.0101
>NTDB_id=228161 DFI_RS03185 WP_022800127.1 631916..632515(-) (recR) [Deinococcus ficus strain CC-FR2-10]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHSCSVCFNITDSQKCDVCSDPSRDQN
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDRLHIKPLLPRVQEGMEVILATGTTVEGDATALYLQRLLEP
LGADVSRIAYGIPAGGTLEYTDEVTLGRALTGRQRITRN
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHSCSVCFNITDSQKCDVCSDPSRDQN
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDRLHIKPLLPRVQEGMEVILATGTTVEGDATALYLQRLLEP
LGADVSRIAYGIPAGGTLEYTDEVTLGRALTGRQRITRN
Nucleotide
Download Length: 600 bp
>NTDB_id=228161 DFI_RS03185 WP_022800127.1 631916..632515(-) (recR) [Deinococcus ficus strain CC-FR2-10]
ATGAAGTACCCGCCCTCGCTGGTCGCCCTGATCCGGGAACTGTCGCGCCTGCCCGGCATCGGCCCGAAAAGCGCGCAGCG
CCTCGCCTTCCACCTGTTCGAGCAGCCCCGCGAGGACATCGAGCGCCTCGCGTCGGCGCTGCTGGAAGCCAAACGGGACC
TGCACAGTTGCTCGGTGTGCTTCAACATCACCGACAGCCAGAAATGCGACGTGTGCAGTGACCCCAGCCGCGACCAGAAC
GTGATCTGCGTCGTGGAGGAACCCGGGGACGTGATCGCCATCGAACGCAGCGGCGAGTACCGCGGGCTGTACCACGTGCT
GCACGGCGTGCTGAGCCCCATGAACGGCGTGGGCCCCGACCGGCTGCACATCAAGCCGCTGCTGCCGCGCGTGCAGGAGG
GCATGGAGGTGATCCTCGCGACCGGCACCACCGTCGAGGGGGACGCCACCGCGCTGTACCTGCAGCGTCTGCTGGAGCCG
CTGGGCGCGGACGTGAGCCGCATCGCGTACGGCATCCCGGCCGGCGGCACGCTGGAGTACACCGACGAGGTGACCCTGGG
CCGCGCCCTGACCGGCCGGCAGCGCATCACCCGCAACTGA
ATGAAGTACCCGCCCTCGCTGGTCGCCCTGATCCGGGAACTGTCGCGCCTGCCCGGCATCGGCCCGAAAAGCGCGCAGCG
CCTCGCCTTCCACCTGTTCGAGCAGCCCCGCGAGGACATCGAGCGCCTCGCGTCGGCGCTGCTGGAAGCCAAACGGGACC
TGCACAGTTGCTCGGTGTGCTTCAACATCACCGACAGCCAGAAATGCGACGTGTGCAGTGACCCCAGCCGCGACCAGAAC
GTGATCTGCGTCGTGGAGGAACCCGGGGACGTGATCGCCATCGAACGCAGCGGCGAGTACCGCGGGCTGTACCACGTGCT
GCACGGCGTGCTGAGCCCCATGAACGGCGTGGGCCCCGACCGGCTGCACATCAAGCCGCTGCTGCCGCGCGTGCAGGAGG
GCATGGAGGTGATCCTCGCGACCGGCACCACCGTCGAGGGGGACGCCACCGCGCTGTACCTGCAGCGTCTGCTGGAGCCG
CTGGGCGCGGACGTGAGCCGCATCGCGTACGGCATCCCGGCCGGCGGCACGCTGGAGTACACCGACGAGGTGACCCTGGG
CCGCGCCCTGACCGGCCGGCAGCGCATCACCCGCAACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
88.889 |
99.497 |
0.884 |