Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CAB88_RS19570 Genome accession   NZ_CP021061
Coordinates   3697318..3698097 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692318..3703097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS19545 (CAB88_19530) uppS 3693066..3693842 (-) 777 WP_000971298.1 isoprenyl transferase -
  CAB88_RS19550 (CAB88_19535) frr 3693928..3694485 (-) 558 WP_000531505.1 ribosome recycling factor -
  CAB88_RS19555 (CAB88_19540) pyrH 3694488..3695210 (-) 723 WP_000042669.1 UMP kinase -
  CAB88_RS19560 (CAB88_19545) tsf 3695277..3696164 (-) 888 WP_001018577.1 translation elongation factor Ts -
  CAB88_RS19565 (CAB88_19550) rpsB 3696268..3696969 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  CAB88_RS19570 (CAB88_19555) codY 3697318..3698097 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CAB88_RS19575 (CAB88_19560) hslU 3698175..3699566 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  CAB88_RS19580 (CAB88_19565) hslV 3699589..3700131 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  CAB88_RS19585 (CAB88_19570) xerC 3700174..3701073 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  CAB88_RS19590 (CAB88_19575) trmFO 3701139..3702443 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=228074 CAB88_RS19570 WP_000421290.1 3697318..3698097(-) (codY) [Bacillus thuringiensis strain ATCC 10792]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=228074 CAB88_RS19570 WP_000421290.1 3697318..3698097(-) (codY) [Bacillus thuringiensis strain ATCC 10792]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment