Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MCCS_RS07715 Genome accession   NZ_CP021059
Coordinates   1470661..1473054 (-) Length   797 a.a.
NCBI ID   WP_086042805.1    Uniprot ID   A0A1W7ACA5
Organism   Macrococcoides canis strain KM 45013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465661..1478054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCS_RS07695 (MCCS_15890) - 1466722..1467033 (-) 312 WP_086042802.1 DUF1292 domain-containing protein -
  MCCS_RS07700 (MCCS_15900) ruvX 1467049..1467468 (-) 420 WP_086042803.1 Holliday junction resolvase RuvX -
  MCCS_RS07705 (MCCS_15910) - 1467461..1467706 (-) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  MCCS_RS07710 (MCCS_15920) alaS 1467786..1470410 (-) 2625 WP_086042804.1 alanine--tRNA ligase -
  MCCS_RS07715 (MCCS_15940) recD2 1470661..1473054 (-) 2394 WP_086042805.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MCCS_RS07720 (MCCS_15950) - 1473057..1473716 (-) 660 WP_086042806.1 tetratricopeptide repeat protein -
  MCCS_RS07725 (MCCS_15960) mnmA 1473817..1474932 (-) 1116 WP_086042807.1 tRNA 2-thiouridine(34) synthase MnmA -
  MCCS_RS07730 (MCCS_15970) - 1474944..1476071 (-) 1128 WP_086042808.1 cysteine desulfurase family protein -
  MCCS_RS07735 (MCCS_15980) - 1476244..1477239 (+) 996 WP_086042809.1 LLM class flavin-dependent oxidoreductase -
  MCCS_RS07740 (MCCS_15990) cymR 1477357..1477779 (-) 423 WP_086042810.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90211.49 Da        Isoelectric Point: 4.5465

>NTDB_id=228026 MCCS_RS07715 WP_086042805.1 1470661..1473054(-) (recD2) [Macrococcoides canis strain KM 45013]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDRVPKLSDEKKDLIFNTIHDNQAIEKIM
IRLNEFGFGPRLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKLDNAGDNVLPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=228026 MCCS_RS07715 WP_086042805.1 1470661..1473054(-) (recD2) [Macrococcoides canis strain KM 45013]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGAACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGATACCTTCCGC
AAATTGCAGAAGGGGATACATATACGTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTCGGTAA
GAAAACAGCGAGAACAATCGTTGAAGTCCTGGGTGAAGATGCGCTAAATATTATTCTCGATGATAAAAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGATCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACGGCTTGCGATGAAGATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCCCCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGCTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTATTCTGAAACGAAAGCTGTACAAATATTGCATCGATTAATGAATCATAAGGATCAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTGTATGCTGAACTGCATGGGTTAAGTCTAGATTATGATGACTATGATGGACAGGACTATCCGATTGTTGTCGCAGCA
CCCACTGGTCGTGCATCGAAACGACTTCAGGAGTCTACAGGACTTGAAGCGACGACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGCCGCAGATTGAGCTGAATGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCACCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGGCCAGCGGGTATACGTGCGCTGAACAAAGT
ACTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAATTACAGTTTGGTGATGTTTATTTCAGAACAGGTGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGCGATATTGGTGAAGTGACGGGTATCTTCATGGCG
GCAGAGAACGCACTGAATAAAGATGTTGTCATAGTGGATTATGATGGGAGTGAAGTGACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCAGAATTTCCGATTGTCATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCATTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGATTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCTTGATAATGCAGGTGACAACGTATTACCTTTCAACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-543)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7ACA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.553

100

0.521

Multiple sequence alignment