Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B6257_RS18130 Genome accession   NZ_CP021011
Coordinates   3530475..3531254 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GFP-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3525475..3536254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS18110 (B6257_18015) trmFO 3526162..3527469 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B6257_RS18115 (B6257_18020) xerC 3527539..3528456 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  B6257_RS18120 (B6257_18025) hslV 3528472..3529017 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  B6257_RS18125 (B6257_18030) hslU 3529034..3530437 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  B6257_RS18130 (B6257_18035) codY 3530475..3531254 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B6257_RS18135 (B6257_18040) flgB 3531608..3531997 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  B6257_RS18140 (B6257_18045) flgC 3531997..3532449 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  B6257_RS18145 (B6257_18050) fliE 3532460..3532780 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  B6257_RS18150 (B6257_18055) fliF 3532823..3534433 (+) 1611 WP_101563016.1 flagellar basal-body MS-ring/collar protein FliF -
  B6257_RS18155 (B6257_18060) fliG 3534446..3535462 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  B6257_RS18160 (B6257_18065) fliH 3535455..3536210 (+) 756 WP_101563017.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=227846 B6257_RS18130 WP_003154263.1 3530475..3531254(+) (codY) [Bacillus velezensis strain GFP-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=227846 B6257_RS18130 WP_003154263.1 3530475..3531254(+) (codY) [Bacillus velezensis strain GFP-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACTGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment