Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   C4N11_RS02760 Genome accession   NZ_CP026670
Coordinates   510108..510374 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain endophthalmitis isolate 335     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505108..515374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4N11_RS02740 (C4N11_02740) - 505323..505832 (+) 510 WP_000619941.1 N-acetyltransferase -
  C4N11_RS02745 (C4N11_02745) pheT 505909..508311 (+) 2403 WP_000909140.1 phenylalanine--tRNA ligase subunit beta -
  C4N11_RS02750 (C4N11_02750) - 508379..509380 (-) 1002 WP_000597976.1 endonuclease/exonuclease/phosphatase family protein -
  C4N11_RS02755 (C4N11_02755) - 509536..509982 (+) 447 Protein_513 IS30 family transposase -
  C4N11_RS02760 (C4N11_02760) HI0659 510108..510374 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  C4N11_RS02765 (C4N11_02765) metE 510635..512884 (+) 2250 WP_000108220.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  C4N11_RS02770 (C4N11_02770) metF 512948..513814 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=227789 C4N11_RS02760 WP_001814186.1 510108..510374(+) (HI0659) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=227789 C4N11_RS02760 WP_001814186.1 510108..510374(+) (HI0659) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment